Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0292 ATGACCATGAAGAGGATGAGAGATGGAGAGCACGAGAGCGTCAGCATAGCAAACTGCTTGATGCTGCTCTCACGGGGAACCGACTACGACTCCATCGCTAGAGTCCCCAGTCGAGTCTTCGAGTGCAAGACCTGTAACCGGCAGTTCCCGTCGTTCCAGGCGCTGGGCGGCCACCGGGCCAGCCACAAGAAGCCAAGACTGATGGCCCTGAACGGCGACGACCCGGCGCAGTTGCAGAGCTCGCCGTTGAAGCCCAAGACCCACGAATGCTCCATCTGCGGCCTGGAGTTCGCGATAGGGCAAGCCCTGGGAGGCCACATGAGAAGGCACAGAGCCGCAGCATCCGGTGCTACCCAGGCCCTGAGCGAAACGACGTCGTCGTCTTCCCCACCACCTCCTCAAGCGCCCCTTCTGAAGAAACCCAACAGCAGGAGAGTTTTGTGTTTAGATCTGAACTTGACTCCTCTGGAGAATATCGATTTGCAGTTTCAGCTTGGGAAGGTGGCTTCCATGGTTGATTGTTTCCCTTAA 531 0.5763 MTMKRMRDGEHESVSIANCLMLLSRGTDYDSIARVPSRVFECKTCNRQFPSFQALGGHRASHKKPRLMALNGDDPAQLQSSPLKPKTHECSICGLEFAIGQALGGHMRRHRAAASGATQALSETTSSSSPPPPQAPLLKKPNSRRVLCLDLNLTPLENIDLQFQLGKVASMVDCFP* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0292 176 MobiDBLite consensus disorder prediction 109 141 - -
Vvi13g0292 176 SUPERFAMILY beta-beta-alpha zinc fingers 38 110 IPR036236 -
Vvi13g0292 176 Pfam C2H2-type zinc finger 88 112 - -
Vvi13g0292 176 Pfam C2H2-type zinc finger 39 65 - -
Vvi13g0292 176 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vvi13g0292 176 PANTHER ZINC FINGER PROTEIN ZAT5 10 162 - -
Vvi13g0292 176 SMART c2h2final6 88 110 IPR013087 -
Vvi13g0292 176 SMART c2h2final6 40 62 IPR013087 -
Vvi13g0292 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Vvi13g0292 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Vvi13g0292 176 Gene3D Classic Zinc Finger 38 110 - -
Vvi13g0292 176 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0292 Vvi-Chr13 2500654 2501184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0292 3 168 C2H2 Transcription Factor Family AT2G28710 50.000 2.22e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi13g0292 zf-C2H2_6 8.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0292 - - vvi:100242729 339.347