Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0281 ATGCCGATTAACAGAATCGCAATCGGGACGCCGGGGGAGGCCAGCCACCCCGACGCCCTCAAAGCCGCCCTTGCAGAGTTTTTCTCCATGCTCATCTTTGTTTTTGCTGGGGAAGGCTCGGGCATGGCTTTTAACAAGCTGACGGATAGTGGGTCGTCAACACCGGCGGGCCTGGTGGCAGCTGCTCTAGCCCATGGCTTCGCTCTGTTCGTGGCCGTTTCGGTGGGTGCGAACATATCTGGCGGACATGTGAACCCGGCCGTGACGTTTGGAGCCTTTATTGGCGGACACATAACGTTGTTGAGAGGCATTTTGTATTGGATTGCCCAGCTGCTGGGATCTGTCGTTGCATGCTTGCTGCTTAAGTTCTCCACCGGTGGATTGGAAACGTCTGCATTCTCCCTATCCTCAGGTGTGTCGGTGTGGAACGCCCTGGTTTTTGAGATTGTGATGACCTTCGGCCTGGTTTACACAGTGTATGCCACAGCAGTGGATCCAAAGAAGGGGAACTTGGGCATTATTGCACCTATTGCAATTGGTTTCATAGTTGGTGCCAACATATTAGCTGGTGGTGCATTTGATGGTGCTTCCATGAACCCAGCAGTGTCATTTGGGCCTGCTGTTGTTAGCTGGTCATGGGCCAACCACTGGGTCTACTGGGCCGGGCCTCTCATCGGTGCCGCCATTGCCGCCATCATCTACGATCTCATCTTCATTGACAGTACACATGAGCAACTGCCCACCACGGATTATTAG 756 0.5384 MPINRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGEGSGMAFNKLTDSGSSTPAGLVAAALAHGFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWSWANHWVYWAGPLIGAAIAAIIYDLIFIDSTHEQLPTTDY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0281 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Vvi13g0281 251 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Vvi13g0281 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vvi13g0281 251 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0281 251 SUPERFAMILY Aquaporin-like 15 246 IPR023271 -
Vvi13g0281 251 FunFam Probable aquaporin TIP1-1 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0281 Vvi-Chr13 2429028 2430452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0281 1 251 Major Intrinsic Protein MIP AT4G01470 82.540 1.15e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0281 K09873 - vvi:100233003 476.092