Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0279 ATGGGGAAGTTAATGATAGAAATGCAGAATCTCATCCACATCCTTGCTTCTACTATGGTTTTTATTGCAGTGGGGGTTTTTGTTGCTGGTTGGATTGAGGTCTCATGTTGGATTCTTACCGGAGAACGGCAGACAGCTGTCATCAGATCAAGATATGTTCAAGTACTGCTCAATCAGGACATGAGTTTTTTTGATACATATGGTAACAATGGAGACATTGTGAGCCAAGTGCTGAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAAGTTGGGAATTATATTCATAACATGGCTACTTTTTTTAGCGGCCTCATTATTGGATTTATCAACTGTTGGGAGATTGCCCTCATTACATTGGCCACTGGACCATTTATTGTTGCTGCTGGCGGAATATCAAATATTTTTCTGCATAGGCTTGCTGAGAATATTCAAGATGCCTATGCTGAAGCAGCAAGTATTGCTGAACAGGCAGTCTCTTATATTAGGACCCTATACGCATTCACAAATGAAACATTGGCCAAGTATTCCTATGCAACTTCACTACAAGCGACACTGAGATATGGCATATTGATAAGTCTTGTGCAAGGACTTGGGCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCCTTACAGCTTTGGGTTGGAAGGTTCTTGGTTATACATGGAAGAGCTCATGGTGGTGAAATTATAACTGCACTATTCTCTGTAATTTTAAGTGGCCTTGGGCTTAATCAGGCAGCAACAAACTTCTATTCATTTGACCAAGGGCGAATTGCTGCGTATAGGCTTTTTGAGATGATAAGCCGTTCAACCTCTGTGGTTAATCATGATGGGAATACTCTACCTTCTGTACAAGGGAACATTGAGTTTCGGAATGTATATTTTAGTTACCTATCTCGTCCAGAAATTCCTATCTTGAGTGGGTTTTACCTAAGTGTACCTGCTAAAAAAGCAGTGGCACTTGTTGGCAGGAATGGCTCTGGAAAAAGCAGCATTATTCCGCTAATGGAGCGGTTTTATGATCCCACATTAGGAGAAGTCCTTTTGGATGGAGAGAATATTAAAAACCTGAAGCTGGAATGGCTAAGAAGCCAAATAGGACTTGTCACCCAGGAACCTGCTTTACTAAGTTTGAGTATTAGAGATAATATTGCTTATGGGCGACCTAGTGCTACTTCAGATCAGATTGAAGAAGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCACTTGAGAAAGGATATGAAACACAGGTGGGAAGGGCTGGTCTAGCATTGACTGAAGAACAGAAAATAAAACTTTCTGTTGCTAGAGCAGTGCTTTCAAATCCATCTATTCTTCTGCTTGATGAGGTTACTGGAGGACTAGATTTTGAAGCTGAAAGAGCTGTACAGGAGGCTTTAGATCTCCTTATGTTGGGACGATCAACAATAATAATAGCTAGGCGGCTTAGTCTCATAAGGAATGCAGATTACATAGCTGTGATGGAGGAGGGTCAACTTGTTGAAATGGGTACACATGATGAATTATTAACTTTGGATGGCCTATATGCTGAGCTTCTCAAGTGTGAAGAAGCTGCAAAACTTCCAAGGAGGATGCCAGTGAGGAATTACAAGGAGACAGCAACTTTCCAAATTGAAAAAGATTCATCAGCAAGTCATTGTTTCCAAGAACCATCTTCCCCCAAAATGGTCAAATCACCTTCTCTTCAGAGAGTTCCTGGCATCCATGGATTTAGACCCTCAGATCTTGCTTTCAACTCACAAGAATCACCAAAAACTCGAAGCCCTCCACCTGAGCAAATGATGGAAAATGGTGTGCCTTTGGACTCTACGGATAAGGAGCCTTCAATAAAGAGGCAGGACAGTTTTGAAATGAGACTACCGGAGTTACCCAAGATTGATGTCCAGGTGGCACATCAACAAACATCGAATGCTTCAGACCCTGAATCCCCTGTTTCACCACTTTTGACATCTGATCCAAAAAATGAACGTTCCCATTCACAAACTTTTAGTCGGCCCCATAGTCAATTTGACGATGTGCCAATGAGAACAAAGGATGCAAAGGATGTGCGACATCGAGAATCACCTTCATTTTGGAGGCTTGTAGACCTTAGCTTGGCAGAATGGCTTTATGCTGTCTTAGGAAGTATTGGTGCTGCTATCTTTGGTTCTTTTAATCCACTTCTTGCTTATGTTATTGCACTGATAGTAACAGCATATTATAGAGGTGGTGAAGGTGGTGAACATTCTCATGATGATCGTCGTCACTTGAGGCAGGAAGTAGATAAATGGTGCTTGATCATTGCTTGCATGGGTGTTGTGACAGTGGTTGCCAATTTTTTGCAGCATTTCTACTTCGGTATCATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCAATGCTGCGTAATGAAGTTGGATGGTTTGATGAAGAGGATAACAGTGCTGATACCTTGTCCATGCGGTTGGCAAATGATGCTACGTTTGTGCGAGCTGCATTTAGCAACCGACTTTCTATATTTATACAGGACAGTGCAGCTGTTATTGTGGCTGTCCTTATAGGGATGTTGCTGGGATGGAGATTGGCTCTTGTTGCTTTGGCAACCCTACCTATTCTTACTGTTTCTGCTTTCGCCCAGAAATTGTGGCTTGCTGGATTCTCAAGGGGCATACAGGAGATGCACAGGAAAGCATCTTTGGTTCTCGAGGATGCAGTTAGGAATATTTACACTGTTGTAGCTTTCTGTGCTGGCAACAAGGTAATGGAGCTTTACAGACGGCAACTGAGGAAAATATTCAAGCAGAGCTTTTTTCATGGAATGGCTATCGGTTTTGCTTTTGGCTTTTCACAGTTTCTTCTTTTTGCCTGCAATGCTCTTCTCCTCTGGTACACAGCAGTCTCTGTTAAAAACCAGTATATGGATATGCCTACAGCTCTCAAGGAGTACATGGTATTCTCTTTTGCGACCTTTGCCCTTGTGGAGCCTTTTGGCTTGGCTCCTTACATACTTAAACGACGAAAATCTCTTACTTCAGTATTTGAAATCATAGACCGAGTGCCTAATATTGACCCTGATGACAACTCAGCAATGAAACCCCCCAATGTATTTGGTACTATTGAGTTGAAAAATGTTGACTTTTGTTATCCAACACGGCCAGAAGTGCTAGTGTTGAGCAATTTCAGTCTTAAGGTCAGTGGAGGACAAACTGTAGCTGTAGTGGGAGTTTCAGGGTCAGGAAAAAGCACTATAATATCTTTAATAGAGAGATTTTACGATCCGGTTGCTGGTCAGGTTTCTCTAGATGGACGAGATTTGAAATCGTATAACTTGCGGTGGTTGAGGAACCACCTGGGTCTTGTTCAACAGGAACCTATCATTTTCTCAACAACCATTAGGGAAAATATCATATATGCAAGGCACAATGCAAGTGAAGCTGAGATGAAAGAGGCAGCAAGGATAGCAAATGCTCACCACTTCATCAGCAGCTTGCCTCATGGTTATGACACACATGTGGGGATGAGGGGTGTAGATCTAACCCCAGGACAAAAACAGAGAATTGCAATTGCTCGGGTGGTGTTGAAGAATGCACCTATCTTGCTGTTGGATGAAGCAAGCTCTTCCATTGAGTCTGAGTCAAGCCGAGTGGTGCAGGAGGCTCTTGATACATTGATCATGGGGAACAAAACAACTATTCTGATAGCCCACAGAGCTGCAATGATGAGGCATGTTGACAACATTGTAGTTCTTAATGGAGGGCGGATCATGGAGGAAGGGTCCCACGATTCTTTGGTGGCAAAGAATGGTTTGTATGTTCGTTTGATGCAACCCCACTTTGGGAAGGGTTTGCGTCAGCATCATCGACTTGTTTAG 3903 0.4243 MGKLMIEMQNLIHILASTMVFIAVGVFVAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLIIGFINCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGRAHGGEIITALFSVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSTSVVNHDGNTLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLSVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRPSATSDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSVARAVLSNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLKCEEAAKLPRRMPVRNYKETATFQIEKDSSASHCFQEPSSPKMVKSPSLQRVPGIHGFRPSDLAFNSQESPKTRSPPPEQMMENGVPLDSTDKEPSIKRQDSFEMRLPELPKIDVQVAHQQTSNASDPESPVSPLLTSDPKNERSHSQTFSRPHSQFDDVPMRTKDAKDVRHRESPSFWRLVDLSLAEWLYAVLGSIGAAIFGSFNPLLAYVIALIVTAYYRGGEGGEHSHDDRRHLRQEVDKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEDNSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVLIGMLLGWRLALVALATLPILTVSAFAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRRQLRKIFKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTAVSVKNQYMDMPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPNIDPDDNSAMKPPNVFGTIELKNVDFCYPTRPEVLVLSNFSLKVSGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVSLDGRDLKSYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIMEEGSHDSLVAKNGLYVRLMQPHFGKGLRQHHRLV* 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0279 1300 FunFam ABC transporter B family member 6 659 895 - -
Vvi13g0279 1300 Gene3D - 282 530 IPR027417 -
Vvi13g0279 1300 SUPERFAMILY ABC transporter transmembrane region 706 1035 IPR036640 GO:0005524|GO:0016020
Vvi13g0279 1300 MobiDBLite consensus disorder prediction 644 695 - -
Vvi13g0279 1300 PANTHER ABC TRANSPORTER B FAMILY 16 773 IPR039421 -
Vvi13g0279 1300 SMART AAA_5 319 499 IPR003593 GO:0016887
Vvi13g0279 1300 SMART AAA_5 1077 1264 IPR003593 GO:0016887
Vvi13g0279 1300 CDD ABC_6TM_Pgp_ABCB1_D1_like 7 267 - -
Vvi13g0279 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 292 528 IPR003439 GO:0005524
Vvi13g0279 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 527 IPR027417 -
Vvi13g0279 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 259 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi13g0279 1300 MobiDBLite consensus disorder prediction 644 681 - -
Vvi13g0279 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 719 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi13g0279 1300 FunFam ABC transporter B family member 20 3 296 - -
Vvi13g0279 1300 FunFam ABC transporter B family member 20 1040 1289 - -
Vvi13g0279 1300 Gene3D ABC transporter type 1, transmembrane domain 7 544 IPR036640 GO:0005524|GO:0016020
Vvi13g0279 1300 Coils Coil 138 158 - -
Vvi13g0279 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1050 1287 IPR003439 GO:0005524
Vvi13g0279 1300 MobiDBLite consensus disorder prediction 554 621 - -
Vvi13g0279 1300 FunFam ABC transporter B family member 20 282 530 - -
Vvi13g0279 1300 SUPERFAMILY ABC transporter transmembrane region 11 271 IPR036640 GO:0005524|GO:0016020
Vvi13g0279 1300 Pfam ABC transporter transmembrane region 13 242 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi13g0279 1300 Pfam ABC transporter transmembrane region 724 996 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi13g0279 1300 CDD ABC_6TM_Pgp_ABCB1_D2_like 710 1033 - -
Vvi13g0279 1300 MobiDBLite consensus disorder prediction 554 572 - -
Vvi13g0279 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1038 1286 IPR027417 -
Vvi13g0279 1300 FunFam ABC transporter B family member 6 897 1047 - -
Vvi13g0279 1300 Gene3D - 1048 1287 IPR027417 -
Vvi13g0279 1300 Pfam ABC transporter 313 458 IPR003439 GO:0005524
Vvi13g0279 1300 Gene3D ABC transporter type 1, transmembrane domain 659 899 IPR036640 GO:0005524|GO:0016020
Vvi13g0279 1300 Gene3D ABC transporter type 1, transmembrane domain 904 1047 IPR036640 GO:0005524|GO:0016020
Vvi13g0279 1300 MobiDBLite consensus disorder prediction 589 603 - -
Vvi13g0279 1300 Pfam ABC transporter 1068 1216 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0279 Vvi-Chr13 2409959 2421339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0279 13 601 Calmodulin-binding Proteins AT2G36910 44.759 6.91e-158 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0279 K05658 - vvi:100259831 2479.13