Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0278 ATGATGATATCGAGAGGGCTGTTCGGGTGGTCTCCGCCGCACATACAGCCGCTGACGCCGGTGTCGGAGGTGTCGGAGCCTCCGGAATCCCCGTCGCCGTACTTGGAGCCGAACGTGGATGCGGTGCCGGTGGAGGTGGAGGAGGAGATTGAGGAGCCGGAGGAGATCGAGCCGCCGCCTGCGGCCGTGCCCTTCTCGCGGCTTTTTGCGTGTGCCGATGGACTCGACTGGGGTTTGATGGTGATTGGATCCTTGGCCGCTGCGGCTCACGGTACTGCACTGGTAGTTTACTTGCATTACTTTGCGAAGATTGTTCAGTTGCTGGACGTTGTTCCCGATGCACGGGACGAGTTGTTTCGTAGGTCTACGGAGGTAGGTGCTCTTTGA 387 0.5995 MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLEPNVDAVPVEVEEEIEEPEEIEPPPAAVPFSRLFACADGLDWGLMVIGSLAAAAHGTALVVYLHYFAKIVQLLDVVPDARDELFRRSTEVGAL* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0278 128 Gene3D ABC transporter type 1, transmembrane domain 58 126 IPR036640 GO:0005524|GO:0016020
Vvi13g0278 128 MobiDBLite consensus disorder prediction 19 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0278 Vvi-Chr13 2387669 2388055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0278 50 105 Calmodulin-binding Proteins AT2G36910 46.429 1.45e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0278 K05658 - vvi:100259831 191.43