Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0276 ATGGCTCCTGCTAAAGTTGATCCTACAAAAAAGGCAGATCCTAAGACTCATGCTGCTAAGACTGCCAAGGCTCTGAAATCAGGTACAGCCACTTTTAAGAAGAAAGCTAAGAAGATCCGCACATCAGTCACATTTCATCGGCCAAGGACATTGAAGAAGGACAGGAACCCTAAGTACCCACGCATTAGTGCTCCTTCAAGAAATAAGCTAGACCAGTATCAGGTTCTCAAGTATCCACTGACTACTGAATCTGCAATGAAGAAGATTGAGGACAACAACACCCTGGTTTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCAGTGAAGAAGATGTACGAAATTCAGACCAAGAAAGTTAACACTTTGATCAGGCCTGATGGAACCAAGAAGGCTTATGTTAGGTTGACACCGGACTATGATGCCTTGGATGTGGCAAACAAGATCGGGATCATCTAA 468 0.4316 MAPAKVDPTKKADPKTHAAKTAKALKSGTATFKKKAKKIRTSVTFHRPRTLKKDRNPKYPRISAPSRNKLDQYQVLKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0276 155 FunFam 60S ribosomal protein L23a 34 155 - -
Vvi13g0276 155 NCBIfam 50S ribosomal protein L23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Vvi13g0276 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 GO:0019843
Vvi13g0276 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi13g0276 155 Pfam Ribosomal protein L23, N-terminal domain 15 66 IPR005633 -
Vvi13g0276 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 73 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vvi13g0276 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi13g0276 155 MobiDBLite consensus disorder prediction 1 39 - -
Vvi13g0276 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi13g0276 155 Gene3D - 36 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0276 Vvi-Chr13 2379182 2380772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0276 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 85.806 1.63e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0276 K02893 - vvi:100254719 270.781