Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0260 ATGGTGGGAAAAGAGGATGGTTCTCGTGTTCCGTACCAGGTTGCTGGAAATCGGAAAACGTTCTGGCGGTCGGCGTCCTGGTCTTCGTCTCGGACGGGGCTGAGAAACCCTGAGTCTGAAGAAAAGGATTGCTCAGATCCAAACGGTGGTATTGGGAATAATAGTGGCCAAAACCGGCGGTTTCCGGCTCCATTAACCCCACGATCTCAGCAAAACTGTAAGGCCCGGGCGTGCTTGCCACCACTGCAGCCATTGTCCATTGCTCGCAGGAGCTTGGATGAGTGGCCAAAGGCAAGTTCTGATGATGTTGGGGAGTGGCCTCAACCACCCACCCCAAGTGGGAGAGATATGAATAAGGGTGGAGATAGGCTGAAGCTTGATTTGTCTGCGATTCAGAAAAACCCGGATAAGAATGGTGGGCTTGTGAGGAGGGATAAGATTGCATTCTTTGATAAAGAGTGCTCTAAGGTTGCTGAACATATATATCTTGGGGGAGATGCGGTTGCAAAGGATAGGGAGATTTTGAAGCAGAACAGAATCACCCATATTCTCAATTGTGTGGGTTTTGTTTGTCCTGAATATTTCAGAGCCGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGTCCATCTGAAGACATCACCAGTATACTTTATGATGTTTTTGACTACTTTGAGGATGTTAGAGAACAGGGGGGAAGGGTTTTTGTTCATTGTTGCCAAGGGGTGTCTCGATCCACTTCGCTTGTGATTGCATATCTTATGTGGAGAGAAGGGCAGAGTTTTGAAGATGCATTTCAGTATGTGAAAGCAGCTAGGGGAATTGCTGATCCAAATATGGGGTTTGCTTGCCAGTTGTTACAGTGTCAAAAAAGGGTCCATGCCTTTCCTCTTAGTCCAAGTTCATTACTGAGGATGTATAGAATTGCCCCACACTCTCCATATGATCCTTTGCATCTTGTTCCAAAAATGTTGAATGATCCTTCACCATCTGCTCTTGATTCTAGGGGTGCATTTATTGTACATGTACCTTCTGCAATCTATGTTTGGATTGGTAAAAATTGTGAGTTCATAATGGAAAGGGATGCCAGAGCTGCGGTTTGTCAGATTGTTCGTTATGAAAGAGTACAGGGGCCAATAACAGTGATCAAGGAAGGAGAAGAACAGTCATACTTCTGGGATGCTTTTTCTAACCTTTTGCCTTTGATGGATAAATCTGTTAATGGGGTGGAGGTTGGGAAATCAATGGTTGATGTTTGCCTTGGTGAGAGAAAAGTGGATTCATATAATGTTGATTATGAGATTTTCAAGAAAGCAATCTCCGGGGGTTTTGTGCCCCCTTTTGCATCATCTGAGACTGAACATGAAACCCACCTTCCTGTAAGAGAAAGCAGTTGGAGTGCGCTGAGGCGTAAGTTTGCCTTTGGCAATATGAAGGAGTTCATTTCGGCTCCCAGGTTATCCTTTCACAGGGTGTTTTCAGATTCTATGTTAATAGTCGGTGTTGATAATTTTATGAACAAACCATCACATTCTCCTGCTAATTCTTCAACATCATCCTCACCACCACCATCATCATCATCATCAGCATCATCATCATCATCATCATCATCTTCATCTTCCTCACCACCTTATCTCTCCCCTGATTCCATTTCTTCCGATTCAAGTGGTACATCAAAGTATTTTTCTGAGTCCCCTCTGATGTCTCCTTCCACTGTTGCATGCCCTCTTCCTCTATCATCAACCTTGTCTACCCTTTCTAATTTGTCTCTTTTCACATCTAGCACATCTAACACTTCTTCTCAATCTGCATCTAATGCTTCTTTTCAATCTGTGTCTAACAATCCAGAACTTGTTAGTGTTACTTCACAGCATTCTTCTCAATCAGTCTCCCTACCATTTAAAAGATTTCCCGTTTCCCTGGCTGAGCGCAGAGGTAGCTTGTCAAAGTCACTTACACTGCCTGTGTTGACTGATGAAACAAGGTTAAAAAATAATGTTTCAACTTCGGTTTCCTGTCAAGAAGATGCTGTGAGGATAGACGTCAACACTTGCTCTTTTTCTGAACCATGTTCTAGTGTAGAACATGTCTCAGAGTTCAAGAATGGTGCTAGAAATGGAGATGGGAACTCAACTGAACAATGCGAGTTGCGGATATCATCAGGTAGAGTAGCTAGTGATGATTCACATAAGGACATTGGTTTTGTCAGAAATGGTGATGAGACACTGAGAAATGATCCTTTGGAAGGAAGTCAGGATTCAACTGTCTTGACTGGAATGATGGAAGCTCATGGTGACCCAGTACAACCATTAGTATGTTGCTGGCCTAGCTTAGAAAAATTTGCATCCTTTGGTGCAGGTGATCTGGATTCCAAAGCTGCATTTGTTTTCTTCTTTCCAAGTACAGGTTTAGGAAAAGCTGAGGATAGGATTATATATATTTGGGTAGGAAGATCTTTCAATCATGGTAATACCCGGGCTCTACTAGATAGCAGCAGAGAGGTAGGTGATCTAGAAGAGATTGACTGGAACCAAGTTGGTTGTGATGTTCGTTCTCAGCTGGGTCTGCCAGAGGACACTGCCATTAAGATTGTTAAAGAAGATGAAGAGCCAGTAGAATTCTTTGCATTGTTGCATCCATTGTAG 2646 0.4327 MVGKEDGSRVPYQVAGNRKTFWRSASWSSSRTGLRNPESEEKDCSDPNGGIGNNSGQNRRFPAPLTPRSQQNCKARACLPPLQPLSIARRSLDEWPKASSDDVGEWPQPPTPSGRDMNKGGDRLKLDLSAIQKNPDKNGGLVRRDKIAFFDKECSKVAEHIYLGGDAVAKDREILKQNRITHILNCVGFVCPEYFRADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIVHVPSAIYVWIGKNCEFIMERDARAAVCQIVRYERVQGPITVIKEGEEQSYFWDAFSNLLPLMDKSVNGVEVGKSMVDVCLGERKVDSYNVDYEIFKKAISGGFVPPFASSETEHETHLPVRESSWSALRRKFAFGNMKEFISAPRLSFHRVFSDSMLIVGVDNFMNKPSHSPANSSTSSSPPPSSSSSASSSSSSSSSSSSPPYLSPDSISSDSSGTSKYFSESPLMSPSTVACPLPLSSTLSTLSNLSLFTSSTSNTSSQSASNASFQSVSNNPELVSVTSQHSSQSVSLPFKRFPVSLAERRGSLSKSLTLPVLTDETRLKNNVSTSVSCQEDAVRIDVNTCSFSEPCSSVEHVSEFKNGARNGDGNSTEQCELRISSGRVASDDSHKDIGFVRNGDETLRNDPLEGSQDSTVLTGMMEAHGDPVQPLVCCWPSLEKFASFGAGDLDSKAAFVFFFPSTGLGKAEDRIIYIWVGRSFNHGNTRALLDSSREVGDLEEIDWNQVGCDVRSQLGLPEDTAIKIVKEDEEPVEFFALLHPL* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0260 881 Gene3D Severin 304 399 IPR029006 -
Vvi13g0260 881 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Vvi13g0260 881 SUPERFAMILY Actin depolymerizing proteins 300 403 - -
Vvi13g0260 881 Gene3D Protein tyrosine phosphatase superfamily 141 295 IPR029021 -
Vvi13g0260 881 MobiDBLite consensus disorder prediction 510 552 - -
Vvi13g0260 881 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Vvi13g0260 881 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Vvi13g0260 881 MobiDBLite consensus disorder prediction 48 68 - -
Vvi13g0260 881 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 147 294 IPR029021 -
Vvi13g0260 881 PANTHER MKPA PROTEIN 15 878 - -
Vvi13g0260 881 MobiDBLite consensus disorder prediction 21 68 - -
Vvi13g0260 881 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Vvi13g0260 881 CDD DSP 154 288 - -
Vvi13g0260 881 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Vvi13g0260 881 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0260 Vvi-Chr13 2279402 2284853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0260 1 189 Protein tyrosine phosphatase (PTP) family AT3G55270 65.445 6.11e-70 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0260 - - vvi:100260475 1642.09