Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0246 ATGACTGTTGGAAAATTTGATTTGCTCTTCTGGGTTTCGTCCATCTTCTGTTTGATGTATGTTTCATTAGGATTTGATCCTACAGACAACTATCTGATAGATTGTGGATCCTCCAAAAATACTTCTGTGGGTAATCGCACTTTTGCGTCTGATAACTCTGATTCCTACACCGTCTCAACCCCAGAACGCCTTTTCGCCAGCACAAACTCTAATACCATCTCTTCCAACTACGATTCATCTCTGTATCAAACTGCTCGAATTCTCAATGAAACAACCCACTACACGTTTTCAATCAAGGCCCCTGGATGGCACTGGATTCGCCTCCATTTCTTTCCGTTTGTTTACCAAGAATTCAATCTGAGCGCCGCGAAATTCTCGGTTTCTGTAAAAAATTTCACTCTCATCAGAGAATACCAGCCCCAGAATGACGCAGAGGTTAAGGAATACTCTTTGAATATATCTTCAGGGCCTCTGGTGCTCACCTTTACCCCTTCTGCCAATTCGTTTGCCTTTGTGAATGCTCTGGAAGTTCTTTCGCTCCCTGATGGCCTCATCCCTGATGGAGCTTCAGTGGTCCACCAGCCTGGCAGTTACCAGAATCTGGAGAAGCAGGCGTTAGAGACTGTAATCAGGGTGAATATGGGCAACCAAACAGTCTTTCCCCAAAATGATACCTTATGGAGACTTTGGATTTCGGATTACAGTTATTTGAAACACAATAATCTTGGCACCTTTGTGTCGAAGGAGGATAAAGTCAATTACACGAGTGGGGGGCCGACTCAGGATACTGCTCCGCGTTCGGTCTATGGCACTGCAACAACGATAAATGATGACTCTGATCCCAGAATCATGGTTAATGTCACTTGGCTTTTTGATGTTGATCCTGAATTTGAGTATCTGGTTCGGTTCCATTTTTGTGATATAGTGAGTTCATCTCCAAAGATGCTCTTTTTCAATGTTTATATCAACGCCTTGGCTGTTGTTACGGATTTCGATCTTAGTAATAGGACATCAAACATTTTGGGTGCCCCATATTACATGGACGTCATCATAAAGATGGGCGATAGCCGGGCCCTCAATGTAAGCATTGGCCGATCGACGGTGGATTCGCGTCGAACAATGGCCATTCTCAATGGTCTGGAGATCATGAAAATGAATAATTCGAAGGGCAGTCTTGATGTCTTGGACTCTGAAGTTAAGTCTTCAAAGACAAGCTCCAAGGTTAAAGTCTGGGTTATGGTGGGCTTAGCCGGTGGGGTGCTGTGTACTGTTGCGGTTTTAGCTTTAGTTCTCTTCCTGCTGTGTAGAAGAAGAAGAAAACTATCACATGTCGGGCATTCAGTGCAGGATCGGTTTGGCGAGAATGGAGGAGGGAATTTGCGTAGTAGGAACATGGATGGAAGTGCTATTTTCTCCGTCTCGAAAATTGGGTACCGCTTCCCTTTTGTGGCAATTCAACAGGCTACAGATAATTTCAGTGAAAATATGGTCCTTGGAGTTGGTGGTTTTGGGAAGGTCTACAAGGGAACTCTGGGAGATGAAACAAAGGTGGCAGTAAAGAGGGGACTTGCTCAATCCCGACAAGGTCTTGCAGAATTTCGGACCGAAATTGAAATGCTGTCTCAGTTTCGTCACCGTCATTTGGTGTCTTTGATTGGATACTGTGATGAAAGAAAGGAGATGATAATTATTTACGAGTATATGGAGAATGGCACCCTCAAGAACCATCTATATGGCTCAGATTTGCCTGCCTTGAGTTGGAAACAGAGGCTTGAGATCTGCATTGGATCAGCAAGAGGACTTCACTATCTTCATACTGGTACTGCAAAGGCGATTATTCACCGTGATGTTAAGTCTGCCAACATTCTACTAGATGAAAATCTCATGGCCAAAGTTGCAGATTTTGGGCTTTCAAAAATTGGTCCCGAGATCGATGAGACTCATGTCAGTACTGCAGTGAAAGGAAGCTTTGGATATCTCGACCCAGAGTATTTAACTAGGCAACAACTCACAGAGAAATCCGATGTATACTCCTTAGGTGTGGTCATGTTTGAAGTCCTTTGTGGAAGGCCTGTTATTGATCCCTCCCTTCCCAGGGAAGAGGTGAATTTAGTTGAATGGGCCATGAAATGGCAGAGGAAAGGCCAGTTGGAGGAAATCATAGATCCCCGGCTTGCTGGTAAAATAAAACCAGATTCTTTGAAGAAGTTTGGGGAGACAGCTGAGAAATGCTTGGCAGAATATGGCAGCGATCGACCCGCAATGGGAGACGTCTTATGGAACTTGGAATATGCCTTACAACTTCAAGTGAGTGGTGAAAGATCAAATGTCAATGGCGGTGAGATGAGCCAAGAAGCTGGAAGCATCAATCGCTTGCCATCTGGTTTTTCTACTGCACACTTCAGCATGGGAAGCATAGACGACATTGCTGGTATTTCAATGAGTGCAGTATTCTCTGAGCTGGTTAAAGCCGACATGAGATGA 2484 0.4436 MTVGKFDLLFWVSSIFCLMYVSLGFDPTDNYLIDCGSSKNTSVGNRTFASDNSDSYTVSTPERLFASTNSNTISSNYDSSLYQTARILNETTHYTFSIKAPGWHWIRLHFFPFVYQEFNLSAAKFSVSVKNFTLIREYQPQNDAEVKEYSLNISSGPLVLTFTPSANSFAFVNALEVLSLPDGLIPDGASVVHQPGSYQNLEKQALETVIRVNMGNQTVFPQNDTLWRLWISDYSYLKHNNLGTFVSKEDKVNYTSGGPTQDTAPRSVYGTATTINDDSDPRIMVNVTWLFDVDPEFEYLVRFHFCDIVSSSPKMLFFNVYINALAVVTDFDLSNRTSNILGAPYYMDVIIKMGDSRALNVSIGRSTVDSRRTMAILNGLEIMKMNNSKGSLDVLDSEVKSSKTSSKVKVWVMVGLAGGVLCTVAVLALVLFLLCRRRRKLSHVGHSVQDRFGENGGGNLRSRNMDGSAIFSVSKIGYRFPFVAIQQATDNFSENMVLGVGGFGKVYKGTLGDETKVAVKRGLAQSRQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERKEMIIIYEYMENGTLKNHLYGSDLPALSWKQRLEICIGSARGLHYLHTGTAKAIIHRDVKSANILLDENLMAKVADFGLSKIGPEIDETHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSLGVVMFEVLCGRPVIDPSLPREEVNLVEWAMKWQRKGQLEEIIDPRLAGKIKPDSLKKFGETAEKCLAEYGSDRPAMGDVLWNLEYALQLQVSGERSNVNGGEMSQEAGSINRLPSGFSTAHFSMGSIDDIAGISMSAVFSELVKADMR* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0246 827 PANTHER OS07G0166700 PROTEIN 479 769 IPR045272 GO:0004714|GO:0006468
Vvi13g0246 827 SMART serkin_6 492 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0246 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vvi13g0246 827 Gene3D Transferase(Phosphotransferase) domain 1 568 782 - -
Vvi13g0246 827 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Vvi13g0246 827 ProSiteProfiles Protein kinase domain profile. 492 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0246 827 Pfam Malectin-like domain 33 385 IPR024788 -
Vvi13g0246 827 CDD STKc_IRAK 498 763 - -
Vvi13g0246 827 FunFam receptor-like protein kinase FERONIA 459 567 - -
Vvi13g0246 827 Gene3D Phosphorylase Kinase; domain 1 457 567 - -
Vvi13g0246 827 FunFam Receptor-like protein kinase FERONIA 568 779 - -
Vvi13g0246 827 FunFam Putative receptor-like protein kinase 30 181 - -
Vvi13g0246 827 FunFam Receptor-like protein kinase FERONIA 205 387 - -
Vvi13g0246 827 Gene3D - 204 387 - -
Vvi13g0246 827 Gene3D - 30 180 - -
Vvi13g0246 827 SUPERFAMILY Protein kinase-like (PK-like) 465 763 IPR011009 -
Vvi13g0246 827 Pfam Protein tyrosine and serine/threonine kinase 496 691 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0246 Vvi-Chr13 2113555 2116038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0246 5 827 Receptor kinase-like Gene Family AT5G59700 55.399 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi13g0246 Malectin_like 1.9e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0246 - - vvi:100265586 1605.5