Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0236 ATGCTATTGGGTGCTCGATTCATCGATCGCTGCTGCCTTCATCGTCCTATTGTCTGTCTCTCTCGTCGATTCAAATTCTCTTCTCCAGCGATGCCTCAGGACTCACATTGTGTAGACAAGGACTGTGATGATTTTTTACCATGGCTGGAGCAGAAGGCTGGGGTTGAAATTTCATCAGTGCTTTCAATTGGGAAATCCACTTATGGCAGGTCCTTGTTTGCTTCTAAGTCGATACAAACTGGAGACTGCATACTGAAGGTTCCTTATAATGTGCAAATATCACCAGATAATGTTCCTTCAAAAATTAATTCTTTGCTAGGTGATGAGGTTGGAAATATTGCAAAGCTTGCTATAGTCATCTCAGTGGAGTGGAAAATGGGTCAGGATTCTGAATGGGCCCCTTATATCAACCGTCTCCCTCAGCCTGGGGAAATGCATAGCACAATATTCTGGAGTGAAGGCGAGTTGAAGATGATTCAACAAAGTTCAGTATATCAGGAGACGATTAACCAAAAGGCTCAAATTCAGAAGGACTTTTTGGCAATTAAACCTGTTCTGCATCACTTCTCTGAAAATCTTTTTAAGGATATCTCATTGAAGGAATTCATGCATGCATGTGCTCTAGTTGGATCTCGGGCATGGGGGAGCACAAAGGGTCTCTCTTTGATTCCGTTTGCAGATTTTGTAAATCATGATGGGTTTTCAGATTCAGTTTTATTGGGTGATGAGGACAAGCAATTGTCAGAGGTCATTGCTGATCGTAATTATGCTCCGGGTGAACAGGTTCTGATACGATATGGAAAATTTCCAAATGCCACCCTCCTGTTGGACTTTGGGTTTACGCTTCCATACAACATTTATGACCAGGTCCAGATTCAGGTCAATATACCTCATCATGATCTTCTACGCACACTGAAGTTGGAACTTCTTCATAGACATTGTCCACCAAAAATTGGAGATGTCAATAGCTTCAGCTCTATGGGGAATTCGTTTACAATCAAGTTGGGAAGTGAAGTCTGCTAG 1023 0.4213 MLLGARFIDRCCLHRPIVCLSRRFKFSSPAMPQDSHCVDKDCDDFLPWLEQKAGVEISSVLSIGKSTYGRSLFASKSIQTGDCILKVPYNVQISPDNVPSKINSLLGDEVGNIAKLAIVISVEWKMGQDSEWAPYINRLPQPGEMHSTIFWSEGELKMIQQSSVYQETINQKAQIQKDFLAIKPVLHHFSENLFKDISLKEFMHACALVGSRAWGSTKGLSLIPFADFVNHDGFSDSVLLGDEDKQLSEVIADRNYAPGEQVLIRYGKFPNATLLLDFGFTLPYNIYDQVQIQVNIPHHDLLRTLKLELLHRHCPPKIGDVNSFSSMGNSFTIKLGSEVC* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0236 340 Gene3D set domain protein methyltransferase, domain 1 38 280 - -
Vvi13g0236 340 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 38 280 - -
Vvi13g0236 340 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 41 315 - -
Vvi13g0236 340 CDD SET_RBCMT 52 281 IPR044431 GO:0016279|GO:0018022
Vvi13g0236 340 SUPERFAMILY SET domain 41 285 IPR046341 -
Vvi13g0236 340 Pfam SET domain 69 267 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0236 Vvi-Chr13 2015366 2037014 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi13g0236 SET 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0236 K19199 - vvi:100263808 669.848