Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0230 ATGAGGATTGTGGCACCATGTTGGAGGCCTTCCATAGAAGGTGAAAATTCTGGTAGAGGGGATGTTGCAGGCCGGGTTGATGGTTTATTGTGGTATAAAGATTCAGGGCGCCATGTTAATGGGGACTTTTCTATGGCAGTAATTCAAGCTAATAATGTATTGGAAGATCATAGCAGACTTGATTCGGGGCCGCTGAGCTCACTTGATTCAGGTCCACAAGGAACATTTGTTGGAATTTATGATGGCCATGGAGGTCCTGAAGCTTCCCGGTTTGTCAACAGTAGACTATTTGACAATCTTAAGAAATTCACATCAGAGAATCAGGGAATGTCAGAAGATGTTATCACCAAAGCATTTTTGGCGACAGAGGACGAATTCCTCTCTCTTGTAAAGAAGCAGTGGCTAAGTAAGCCACAAATTGCTTCTGCGGGTTCATGTTGTTTAGTTGGTATAATATGTAGTGGACTGCTTTACATTGCAAATGCAGGAGACTCTCGAGTGGTGTTAGGAAGATTGGAGAAAGCCTTCAGTGAGGTAAAAGCCGTTCAGTTATCTTCTGAGCACAATGCAAATTTTGAATCTGTGAGAGAGGAGTTGCGCATGTTGCATCCTGATGATCCACAGATAGTGGTTTTAAAGCACAAGGTTTGGCGTGTGAAGGGTATAATACAGGTTTCAAGATCCATAGGTGATGCTTACCTGAAGAATGCTGAATTCAACAGAGAGCCTCTATTGCCAAAGTTTAGACTGGATGAGCCCTTCCACAAGCCAATCCTTAAAGCTGAGCCATCGGTTCTAGTGCAGAGACTTCACCCTGAAGACCAGTTTCTTATATTTGCATCTGATGGGCTATGGGAGAACCTTAGTAATCAGGAGGCAGTTGACATTGTCAACAACAGTCCACGTAATGGGATTGCAAGGAAACTTGTCAAAGCTGCATTACAGGAAGCGGCAAAGAAAAGGGAGATGAGATACTCAGACCTGAAAAAGATCGAGCGAGGTGTGAGGAGACATTTTCACGATGATATCACTGTTGTTGTATTGTTTCTTGACTACAGTCTGATCAGTCGCAACTCCAATCGTGGACCTTCACTTTCAATCATAGCAGGGGGAGGTGTCTTTGCAAATGGCAGCACCTAG 1140 0.4386 MRIVAPCWRPSIEGENSGRGDVAGRVDGLLWYKDSGRHVNGDFSMAVIQANNVLEDHSRLDSGPLSSLDSGPQGTFVGIYDGHGGPEASRFVNSRLFDNLKKFTSENQGMSEDVITKAFLATEDEFLSLVKKQWLSKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRLEKAFSEVKAVQLSSEHNANFESVREELRMLHPDDPQIVVLKHKVWRVKGIIQVSRSIGDAYLKNAEFNREPLLPKFRLDEPFHKPILKAEPSVLVQRLHPEDQFLIFASDGLWENLSNQEAVDIVNNSPRNGIARKLVKAALQEAAKKREMRYSDLKKIERGVRRHFHDDITVVVLFLDYSLISRNSNRGPSLSIIAGGGVFANGST* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0230 379 FunFam Phosphatase 2C family protein 31 360 - -
Vvi13g0230 379 ProSiteProfiles PPM-type phosphatase domain profile. 42 350 IPR001932 -
Vvi13g0230 379 PANTHER PROTEIN PHOSPHATASE 40 348 IPR015655 GO:0004722|GO:0006470
Vvi13g0230 379 Pfam Protein phosphatase 2C 62 319 IPR001932 -
Vvi13g0230 379 SUPERFAMILY PP2C-like 37 351 IPR036457 -
Vvi13g0230 379 Gene3D - 32 361 IPR036457 -
Vvi13g0230 379 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vvi13g0230 379 CDD PP2Cc 71 350 IPR001932 -
Vvi13g0230 379 SMART PP2C_4 16 348 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0230 Vvi-Chr13 1958439 1964142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0230 1 379 PP2C-type Phosphatase Gene Family AT3G12620 78.684 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0230 K01102 - vvi:100262161 746.503