Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0226 ATGGGTTGTTTTCCCTGCGCTGGAAAATCAAACAAAAAAGGGAAGAAGAATCAGGAAAAGAACTCCAAGGATCAGATCCCATCCACTTCAGAAAGGTTGAAGGTTAATTCGTCAGTAGATGGAAGGAAGGATGCCTCCAAGGATGGAGGCTCAGATCACATTGCAGCACATACATTCACATTTCGTGAATTGGCAGCTGCAACAAAGAATTTCAGAGCAGAATGTCTTTTGGGTGAAGGGGGTTTTGGCAGAGTCTATAAAGGGCGATTGGAGAGTACTAATAAGATCGTAGCTATCAAGCAACTTGATCGTAATGGACTCCAAGGGAACCGAGAATTCCTTGTCGAAGTATTGATGTTAAGCCTGCTGCACCACCCTAACCTTGTTAACTTAATTGGTTATTGTGCTGATGGAGATCAGAGACTTTTGGTTTACGAATACATGGCATTAGGATCTTTGGAAGACCATCTACATGACCTTCCACCTGATAAAAAACGACTCGACTGGAATACAAGAATGAAAATAGCTGCGGGTGCCGCAAAAGGCTTGGAGTATTTGCATGACAAAGCAAGCCCTCCTGTCATATATCGTGATTTGCAATGCTCAAACATTTTACTTGGTGAAGGGTATCATCCAAAGTTATCGGATTTTGGCTTGGCAAAATTGGGTCCAGTTGGGGATAAGACCCATGTGTCAACTAGAGTGATGGGGACCTATGGATATTGTGCACCAGAATATGCAATGACAGGTCAACTTACGTTAAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATCATCACTGGAAGAAAAGCAATTGACAATTCAAAAGCTGCTGGGGAACACAATTTGGTTGCATGGGCACGGCCTTTATTCAAGGATAGAAGGAAATTCTCACAGATGGCTGACCCAATGCTCCATGGCCAATACCCATTAAGAGGTTTGTACCAGGCTCTTGCTGTGGCTGCAATGTGTGTTCAGGAGCAGCCTAACATGCGGCCCCTTATAGCAGATGTAGTCACTGCCCTGACCTATCTTGCTTCCCAAAAATATGACCCTGAAACCCAGCCGGTCCAAAGCTCCCGGATGGGCTCTTCCACCCCTAGATCCAGAAGGGAACTGTGA 1131 0.4447 MGCFPCAGKSNKKGKKNQEKNSKDQIPSTSERLKVNSSVDGRKDASKDGGSDHIAAHTFTFRELAAATKNFRAECLLGEGGFGRVYKGRLESTNKIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMALGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLQCSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEHNLVAWARPLFKDRRKFSQMADPMLHGQYPLRGLYQALAVAAMCVQEQPNMRPLIADVVTALTYLASQKYDPETQPVQSSRMGSSTPRSRREL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0226 376 FunFam Serine/threonine-protein kinase PBS1 148 363 - -
Vvi13g0226 376 FunFam Serine/threonine-protein kinase PBS1 44 147 - -
Vvi13g0226 376 MobiDBLite consensus disorder prediction 355 376 - -
Vvi13g0226 376 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vvi13g0226 376 MobiDBLite consensus disorder prediction 355 369 - -
Vvi13g0226 376 Pfam Protein tyrosine and serine/threonine kinase 75 343 IPR001245 GO:0004672|GO:0006468
Vvi13g0226 376 SUPERFAMILY Protein kinase-like (PK-like) 57 363 IPR011009 -
Vvi13g0226 376 PANTHER OS07G0668900 PROTEIN 3 357 - -
Vvi13g0226 376 Gene3D Transferase(Phosphotransferase) domain 1 148 367 - -
Vvi13g0226 376 Gene3D Phosphorylase Kinase; domain 1 43 147 - -
Vvi13g0226 376 CDD STKc_IRAK 77 346 - -
Vvi13g0226 376 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0226 376 MobiDBLite consensus disorder prediction 12 27 - -
Vvi13g0226 376 MobiDBLite consensus disorder prediction 1 50 - -
Vvi13g0226 376 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0226 Vvi-Chr13 1906619 1911353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0226 1 375 Glycoside Hydrolase AT3G07070 60.204 7.23e-168 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi13g0226 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0226 - - vvi:100250154 750.355