LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0224	ATGAGGAGTTTTGAGATGAATGTTAACGGTCCTTGGACCAAAGGGTCAGCCGAACTTAACCACCATGCACAAGATGAGCAAAAAAATATAAGGGACAAAGTTGTGGGTGAGGGCCATGGCCTATCCGAGGAAGATGAATCGAGGATTAATGAGGATGTGGAAGATCTGAATGATGGGCGAATAGGGTCAGTCCAGGCAGTCCAGGGCGTTCTGCATGGACCACAGCAACAGCCTCAAGGGCCTATTGTTCGTTGGGAAAGGTTTCTCCCCCTGAGGTCTTTGAAGGTTCTACTGGTGGAAAATGACAATTCAACTCGCCAGGTTGTCAGTGCATTACTTCGAAATTGCAGTTATGAAGTTACTGCTGTAGCAAATGGTGTACAAGCATGGAGCATCTTAGATGATCTAACCAATCATGTAGACCTTGTTCTGGCCGAGGTAGCATTGCCTTCTTTATCAGGCATTGGCCTTCTTTGCAAGATTATGAACCATAAAGCATGCAAGAATATCCCTGTGATTATGATGTCATCCCATGATTCTGTGGGCATAGTCTTTAAATGTTTGTCAAAGGGTGCAGTTGACTTTTTTGTGAAGCCTATTCGAAAAAATGAGCTTAAAAACCTTTGGCAGCATGTGTGGAGGAAATTCCACAGGTTTAGCGGTAGTGAAAGTGAAAGTGAAAGTGGTATACGGACTAAAAAATCTGCAAAGTCAAAGAGTGTTGCTGGGTCAGACAACAACACTGGCAGCAATGATGAGGATAATGGAAGTATTGGTTTGAATGTTAGGGATGGAAGTGACAATGGAAGTGGTACTCAGAGTTCTTGGACTAAAATGGCAGTAGAAGTTGACAGCCCCAAACCAATGCAACCATGGGACCAATCGGCTGATCCTCCAGATAGCACTTGTGCACAGGTTACCCAATCATGGCCTGAAGCATTTGGCAACTACCAGGTGCCCATGACTTCCTCCAAGGATTACCAAGAACAAGATGATGAACTTGATAATGTTGAAATGGGCAAAGACTTGAAGATAGGAGTACCTAGAAACTCAAATTTACAGCTTCAAGATGATGTAGTAGGCGCTAATAAGGATAAATTTCATGAATTGACCTTGAAGAAAGATGATGAAAAATTAGAGAACAGACAAATGGACCTCAACAGTAACAAGCCAAATGATGAATTGGATAAAGAAGCTGTCGATCTGATGAGTGTCATTGCCAACAATACCAATCCTCAGAAAAAAAGTATGGGCTTCAAAACTCCAAGTGGCCTCTCTGAGGTCCCTGAAACTAAAGATAAGGCCATGTACGACAAAAAGGAAATACCTTCCCTTGAGCTCAGTTTGAAGAGGCTGAGAGATACTGGAGGTACTGATACCAATCCCCATGACCAAATCATTTGGAGACATTCCGACCTTTCAGCCTTTTCAAGGTATAATTCTGCTTCAACTGCTATTCAAGCTTCAACTGGCAATGTAGGTAGCTGTTCTCCACTTGATAACAGCTCAGAAGCAGCAAAGACAGAATCCATGCAAAATTTCCAATCTAATTCGAATGGCACTCCTCCCAACCAGAGTTCCAATGGCAGTAGCAACAACAACATGGGCTCTACTACTGATGATTTTTACACCAAGCCAGCAGCATTCGATGATAAACCAGATTCCAAATCTGCAGTCAAACATCTCCAGCACTCTGCTTTCCAACCAGTACAGAATACAATTTTGGCCGATTTTGCAAATGCCAATACAATTTTGGCCCACCCAAGTGCCATGCCCCCACAGGTCCAAATCCAGAACCACCATTACTATTACCACCACCATGTCCATAATATATCACAGCAACAGATACGCATCCATGATGATTTGGCTTTGACCAACATGGCAAAATCTGCTCCACAGTGTGGGTCATCCAATGTGTTGAATGCGCCTGTTGAAGGTTATGCCTGTAATCACAGTTTGAATGGGAGTGCATCAGGAAGTAACCATGGTAGCAACGGCCAAAATGGGAGTACCACTGCTGTAAATGCCCAAGGAACAAATATGGAAAGTGATGATGGAATAGCTGGAAAAGGTGGAGCAGGTGGAGGAAGTGGGAGTGGAAGTGGAAGCAGGAGCGGAGTAGATCAAAACCAATATGCACAAAGAGAGGCTGCATTAAACAAATTCCGCCAGAAAAGGAAAGAACGATGCTTTGAGAAAAAGGTACGATACCAAAGCAGGAAGAGACTGGCCGAACAGAGACCACGCATTCGAGGACAATTTGTTCGTAGGGTATTCCATGATATTAACAGCGAGGATGCAGACAGCTAA	2310	0.4368	MRSFEMNVNGPWTKGSAELNHHAQDEQKNIRDKVVGEGHGLSEEDESRINEDVEDLNDGRIGSVQAVQGVLHGPQQQPQGPIVRWERFLPLRSLKVLLVENDNSTRQVVSALLRNCSYEVTAVANGVQAWSILDDLTNHVDLVLAEVALPSLSGIGLLCKIMNHKACKNIPVIMMSSHDSVGIVFKCLSKGAVDFFVKPIRKNELKNLWQHVWRKFHRFSGSESESESGIRTKKSAKSKSVAGSDNNTGSNDEDNGSIGLNVRDGSDNGSGTQSSWTKMAVEVDSPKPMQPWDQSADPPDSTCAQVTQSWPEAFGNYQVPMTSSKDYQEQDDELDNVEMGKDLKIGVPRNSNLQLQDDVVGANKDKFHELTLKKDDEKLENRQMDLNSNKPNDELDKEAVDLMSVIANNTNPQKKSMGFKTPSGLSEVPETKDKAMYDKKEIPSLELSLKRLRDTGGTDTNPHDQIIWRHSDLSAFSRYNSASTAIQASTGNVGSCSPLDNSSEAAKTESMQNFQSNSNGTPPNQSSNGSSNNNMGSTTDDFYTKPAAFDDKPDSKSAVKHLQHSAFQPVQNTILADFANANTILAHPSAMPPQVQIQNHHYYYHHHVHNISQQQIRIHDDLALTNMAKSAPQCGSSNVLNAPVEGYACNHSLNGSASGSNHGSNGQNGSTTAVNAQGTNMESDDGIAGKGGAGGGSGSGSGSRSGVDQNQYAQREAALNKFRQKRKERCFEKKVRYQSRKRLAEQRPRIRGQFVRRVFHDINSEDADS*	770

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g0224	769	MobiDBLite	consensus disorder prediction	658	710	-	-
	Vvi13g0224	769	MobiDBLite	consensus disorder prediction	489	555	-	-
	Vvi13g0224	769	Pfam	Response regulator receiver domain	96	207	IPR001789	GO:0000160
	Vvi13g0224	769	SMART	REC_2	94	209	IPR001789	GO:0000160
	Vvi13g0224	769	MobiDBLite	consensus disorder prediction	489	541	-	-
	Vvi13g0224	769	ProSiteProfiles	Response regulatory domain profile.	95	213	IPR001789	GO:0000160
	Vvi13g0224	769	SUPERFAMILY	CheY-like	92	220	IPR011006	-
	Vvi13g0224	769	Gene3D	-	93	255	-	-
	Vvi13g0224	769	MobiDBLite	consensus disorder prediction	235	280	-	-
	Vvi13g0224	769	FunFam	Two-component response regulator-like PRR37	94	254	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0224	Vvi-Chr13	1859685	1891150	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0224	170	758	Response Regulator Gene Family	AT5G02810	46.003	5.10e-105	332

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Vvi13g0224		Response_reg	3.9e-19	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0224	K12129		-	vvi:100256937	1421.37

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