Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0222 ATGGCTCGTGGGCACAGGATTGAATCCGTCCCGGAGCTTCCTCTGGTGATTGGAGATTCGGCCGAGAGTGTCGAGAAAACGTCGGCGGCGATTGATATTCTGAAGCAAGTTGGCGCTTATCCTGATGTAGAGAAGGCGAAAGACAGCCACGGTATTCGTCCCGAAAAGGGTAAGATGAGGAACCGCCGCTACATTTCAAGGAAAGGTCCGTTGATCGTCTACGACACGGAGGGTGCGAAGCTTGTAAAGGCTTTCCGGAACATTCCTGGGGTTGAGGTTGCTAACGTCAAGCGGCTCAATCTTCTGAAACTCGCTCCCGGTGGCCATCTTGGAAGGTTCATTATCTGGACCAAATCGGCAATTGAGAAGGTGGATTCAATCTATGGATCCTTTGATAAGACATCGGAGAAGAAGAAGGGATACCTCTTGCCACGCGCAAAGATGGTAAATGCTGATTTGGCTAGGATCATCAACTCGGACGAGGTTCAGTCTGTGGTGAGGCCAATCAAGAAGGAGATGAAGAGGGCACCAATGAAGAAGAACCCGCTCAAGAACTTGAATACAATGTTGAAGCTGAATCCATATGCCAAGACTACAAGGAGGATGGCTCTTCTGGCTGAGGCACAACGGGTCAAGGCCAAGAAGGAGAAGCTTGACAAGAGAAAGGGCTTGAAGGCGGCTGCCAAGAAGGCTGCTGGTGAAAATGATGATGCCCAGGTAGAGAGGCGGGTCGTGATGGAGATTGAGGTTCTGGGCTTGCCCATGATGACGAATATGGGTTTGAGTGGGAGCTCAGGCCCAAGTTTGTTGATGGAGGGCCTCATGCCCATCACCCTCATGGCCCATACCCATATTGAGTCAACCCATTTAGCTGCTTCAATGCTAAGCAATTGTCAAGCTTCTCATTTTCGTAATTTATTCATTTATTTATCTATTTTTATTTTTCATTTTATTTTGTTTTATCTTATTTTACTTTCACATATTTTTTAA 990 0.4727 MARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQVGAYPDVEKAKDSHGIRPEKGKMRNRRYISRKGPLIVYDTEGAKLVKAFRNIPGVEVANVKRLNLLKLAPGGHLGRFIIWTKSAIEKVDSIYGSFDKTSEKKKGYLLPRAKMVNADLARIINSDEVQSVVRPIKKEMKRAPMKKNPLKNLNTMLKLNPYAKTTRRMALLAEAQRVKAKKEKLDKRKGLKAAAKKAAGENDDAQVERRVVMEIEVLGLPMMTNMGLSGSSGPSLLMEGLMPITLMAHTHIESTHLAASMLSNCQASHFRNLFIYLSIFIFHFILFYLILLSHIF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0222 329 PANTHER 60S RIBOSOMAL PROTEIN L4 1 237 IPR045240 -
Vvi13g0222 329 Pfam 60S ribosomal protein L4 C-terminal domain 139 211 IPR025755 -
Vvi13g0222 329 Gene3D - 1 167 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vvi13g0222 329 SUPERFAMILY Ribosomal protein L4 1 126 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vvi13g0222 329 FunFam Uncharacterized protein 1 167 - -
Vvi13g0222 329 Pfam Ribosomal protein L4/L1 family 16 125 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vvi13g0222 329 Coils Coil 201 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0222 Vvi-Chr13 1837516 1838505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0222 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.043 2.60e-124 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0222 K02930 - vvi:100267208 554.288