Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0210 ATGGGTCGAAGAAAGCAACCCAAACCGCATCGATCAGTTGGGGTGGTTGAAAGACTCGAAACCCAGGAAACAGCTGAAGGAGAATTGAATTCCCAGCAAGAGCACGCTCAGGGGGACGAGGTTGGTGATGCTGAGACACCCCTTTTCGTAGAAGTTGATAGAACCGGTTGGGGTTCTGGTGAGCATCTTGATATTTCAGAAATCGTTCTGAATGATTTGAATTTGAGGGAGGAGTTTCATGGGTACAGTCTAGGTGAGGGTTTTTATGAGAATTCTAAGTGTTGTTTGAGGTTTCGGCTCTGCAATGCGAACCAGTTTGTGGGTAGGATTAGGTTGGGTCATTGGCCTGTTGTAGCAGCTAGTAGTATATCTCTAGAATTCGTGGAAAAACGGGTGTCAGAGGAGGGCATTGAAACGGACTCTGTGATCCTCTCCGGGATTTTTGATGGTCCGGATGAGGGTGTTTCGGGTCTTGTTCATTTGAGTCGTCTCAAGTTGTTGACATTGAGGCCTGTTCTAGGAGTTACATTTTCAGAGGGTGTCTCGTTTGTGAGATTGAGGGTTGAGATATTGAGGACTGCGTTTGATGCTTGTGAGTCACTTCTCGATAATTCAAGGCCCCTTTGGAAGAAGAGTATGATGAGTGTCATGGCTTGGTTGCGGCCGGAGGTAACAACTTCAGAGGCAAGGTATGGAGTTGCTAAATCCAAAGAAATGGATATTGATTCGAATATGGGTATGGATGTTGGTGATTTAGATTCGAAGAAGCATCAGAATTTCGATGCTGCTGGATTTTATGAAGCCATTAAACCTTCAAAAGAGGATCCATTGCTGGACTATGACATGCCCGACTTGCTTCCCGAGCTGAGGCCATATCAGCGTCGTGCGGCTTACTGGATGGTACAAAGGGAGATAAAAGGGGAAGGTGGTTCGTTATTTTCTCCACTGTGTATGCCTGTGGATTTTGTCGACTCATTTGAAAGAATGTTCTACAATCCATTCAGTGGAAATGTTTCATTACGTCCAGAATATTCTTCATTGAATGTCTATGGTGGTATCCTTGCAGATGAGATGGGTTTGGGAAAGACTGTTGAACTGCTTGCGTGCATATTTGCACACCGTAAGCCAGCATCTGAAAGTGGCATTTTACTTAATAATGCATTACAAGCTGCTCAAGGTCAGAAGATTAATCTCAAAAGATTGAAAAGGGACCACGTTGAGTGTATATGTGGTGCTGTGAGTGAAAGTCCGCGATACAAAGGATTATGGGTACAGTGTGATGTCTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTACAGCAAAAACTACCAAATCCAAGGAGAATTCTAATGGACAAGTGTTTAAAAAGAACCCTCTGGAAAACTCAAAAAAGCAGACAGGAAAGAAAAATAAAACCAATATAGTTCTGATGGATGGTGAACATATCTGTCAGCTGTGCTTAGAACTGATCCAAGCTACTGACTCTCCTGCTGCTACTGGTGCAACTCTTATTGTGTGTCCAGCTCCTATACTGCCCCAATGGCATGCTGAAATTATTCGTCATACAAACCCAGGTTCCTTGAAACTTTGTGTCTATGAAGGTGTAAGAAATACCTCTCTTTCAAATGCATATGCAATGGATATCAGCAAACTTATCAGTGCCGACATTGTATTAACTACATATGATGTACTAAAAGAGGACCTGTCTCATGACTCTGATAGGCATGAAGGAGACCGTCGCATCATGAGATTCCAAAAAAGATACCCTGTTATTCCAACTCGTCTTACCAGAATATTCTGGTGGCGGGTTTGTTTGGATGAGGCGCAGATGGTAGAGAGTAATGCTGCAGCTGCAACAGAAATGGCATTGCGACTACATGCTAGGCATCGCTGGTGCGTTACAGGGACTCCCATACAACGCCGACTTGATGACTTATATGGACTTTTGAGATTCCTTGAAGCAAGTCCTTTCAACATCCCTAGATGGTGGATTGAAGTTATTCGAGATCCATACGAGAGTAGAGATCCAGGAGCTATGGAGTTCACCCATAAATTCTTTAAACAAATCATGTGGCGATCTTCAAAATTACATGTTGCAGATGAGTTACAGCTTCCTCCTCAGGAGGAGTGCCTTTCTTGGCTCTCTTTCTCACCAATTGAAGAGCATTTCTACCATAGGCAACATGAAACTTGTGTTCATTATGCCCATGAAGTTATCGAAAGTTTCAGAGATCATATTTTCAAAAAAGAAGTGCCAGGTTGTGTATCATCTAATTCTCCTTCAGATCTTTTTATCACTCATGCGGAGGCTGGGAAGCTGCTAAACTCACTTTTGAAGCTTCGTCAAGCCTGCTGCCATCCTCAAGTGGGAAGTTCTGGGCTGCGCTCTTTGCAACAAGCTCCCATGACCATGGAGGAGATATTATCGGTTCTTGTTAGTAAGACAAAGATAGAAGGGGAGGAAGCACTCAGGAAGTCAGTTGTTGCATTGAATGGACTTGCTGGGATAGCTATAATTAAGCAAGATATTTCTCAAGCTGTATCATTGTACAAAGAAGCACTGGCTTTAGCTGAAGAGCACTCTGAAGATTTCCGCTTGGACCCCCTCTTGAATCTTCACATTCATCACAATCTTACTGAGATACTCCCGCTGCCTTCAGAGTCCTCTCATCATTCAAAGGGAGGAGAGTTCCCTAGAAGCGCTGAAGAGAAGGCCTCCAAGATACATAATGTTGAACAATGTGATCAATACATGGCAAAGAGGCAGAAAGTGGGTGGAGAATACCATTCAGGTTTGAATGGTGAGGAAAGGGAACTTCCTTGTTCTACTTCCAACCTATCAGAAGATGGTGTAAATGATAACATAGAATGTGATGCTGAACCTCACATATCATCCAGATTGTTTAATGATGGATGTTTAAGAACAACATGTGAGAACATAAAACAGAAGTTCCTATCTCTGTTTAGTTCAAAGCTGTCTGTGGCCCAGCAAGAACTTAAAAAATCATATATGCAGGTTTGTGATTCACTTAATGATGGAAAAAATCAGCATTCGGTTTGGTGGTTGGAAGCTCTCACTCAGATTGAACAGAATAAGGATGCATCTGGTGAGTTAATAAAAAAGATTGGAGATGCTGTTTCGGGCCCTTTGAACAATGCTAGGTCTTCGAGAATTGATTCTTGCTTTCGAAGCATAAATGCTCTGATGTATCATATCCAGACTGGTTTGGATTCATTGGAAGCCTCTAGGCAAACATTGGTGGATCGACTTCTGGAAATTAATCAAACAATGGAAAGCCCAAGAGAAGAAGATATTGACCGAGTGAGATACTGTCCAAATTGCCAAGCTAATGGAGATGGTCCTTTATGTGTTCACTGTGAACTGGATGAATTATTTCAGGGTTATGAGGCCAGGCTCTTTCGTCTTAACAAGGCACATGGAGGGATGATTACATCTGCTGAGGAGGCAGTAGATTTGCAAAAGAAGATATCTGCACTGAATCGTTTCTACCGTACTTGCTCACAATCCAATAAAAATTCAACTCCGTCTAATGTTGGAAATAAAGAAAATATGCGGAAGAGGGATGTTGGAGAAAAGTTAGTGGTTTCAAAATCTCCATCTGAATTAGAGGTTGTTCTTGGAGTTATAAAAAGTTCTTGCAAGGCTCAATTAGGGAGAGAGGGTCAGTCGGAGGCCACCAAGCAGCTGCTTCTTCTTGAGGGCATGCGAAAGGAGTATGCCCATGCTAGGTCCTTGGCAATTGCTCAAGCTCAAGTTCTTCGTGCTCATGATGAAATTAAGATGGCTACTTCTCGATTGCGCCTAAGAGAGGATGAGAATGATAAATCTATTGATGCTTTAAGTTTAAATGAGCTAGATGCTGCCATTGTGGAAAACTCTAGTGAAAGGTTAATGTCCTTGACCTTGTTGTCACGTATAAAAGGACAACTTCGTTATTTGAAGGGTTTGGTGCTGTCTAAACAAAAATTGCAATTGGAGAGTCCAAATAATGCATCTTTAACTCAAGATACAGCTACTTTGCTGATATCTTGTCCTGTGGAGGAGAAAAACAAATGCATACGTGAAACTGATGATGAAGCATGCCCAGTTTGTCAAGAAAAGCTCAGCAATCGAAGGATGGTTTTTCAATGTGGGCATGTTATTTGCTGTAATTGTTTATTTGCAATGACTGAGAAAAGACTAGTTCACCATGGAAAGTTTCAAGACAAATGGTTAATGTGCCCAACATGTCGACAACATACAGATGTTGGAAATATAGCTTATGCTGATGATAGACAAACTAAATCATGTGATTCTGCTGAACTACATACAGTTCAAAGTGTGGAAAAGTCTGAAGCTTCTGTGATTGTTCAAGGTTCCTATGGAACAAAGATTGAAGCTGTCACTCGAAGAATCCTGTGGATCAAGTGTACAGAGCCAAAAGCAAAAATTCTAGTTTTCTCCAGTTGGAATGATGTCCTCAATGTGTTGGAACATGCCTTGAATGCCAATAATATCACATATGTCCGAATGAAAGGTGGCAGGAAATCACATGTTGCCATCAGCCACTTCAGAAGACAGAGAACAAGTGCAGAAGGAAATGGCCAGACACATGCTCAGCAACCAGAACCAGAACCAGAATTTGTTCAAGTGTTGCTGCTCTTGATCCAACATGGAGCCAATGGCCTCAATCTCTTAGAAGCACAGCATGTTGTTCTTGTAGAGCCACTACTCAACCCAGCTGCCGAAGCACAAGCAATCAGCCGGGTGCACAGAATTGGGCAAGAGAATAGGACTCTTGTTCATCGTTTCATAGTGAAAGACACGGTGGAAGAGAGCATCTACAAACTGAATAGAAGCAGGAACACCAATTCATTCATCAGTGGGAACACAAAGAACCAAGACCAACCTCTTCTGACACTCAAAGACCTCGAGGCCTTATTCACCCCAGTGCCTTCCTCTGTACCACAAAGTGAAGAAAAGCCAACCGGAAGCTTAATGCATTTGCCACCCTCCGTAGCTGCAGCTATAGCTGCCGAGAGGAGACTGAAGCAGCAGGCAACATGA 5079 0.4263 MGRRKQPKPHRSVGVVERLETQETAEGELNSQQEHAQGDEVGDAETPLFVEVDRTGWGSGEHLDISEIVLNDLNLREEFHGYSLGEGFYENSKCCLRFRLCNANQFVGRIRLGHWPVVAASSISLEFVEKRVSEEGIETDSVILSGIFDGPDEGVSGLVHLSRLKLLTLRPVLGVTFSEGVSFVRLRVEILRTAFDACESLLDNSRPLWKKSMMSVMAWLRPEVTTSEARYGVAKSKEMDIDSNMGMDVGDLDSKKHQNFDAAGFYEAIKPSKEDPLLDYDMPDLLPELRPYQRRAAYWMVQREIKGEGGSLFSPLCMPVDFVDSFERMFYNPFSGNVSLRPEYSSLNVYGGILADEMGLGKTVELLACIFAHRKPASESGILLNNALQAAQGQKINLKRLKRDHVECICGAVSESPRYKGLWVQCDVCDAWQHADCVGYSPTAKTTKSKENSNGQVFKKNPLENSKKQTGKKNKTNIVLMDGEHICQLCLELIQATDSPAATGATLIVCPAPILPQWHAEIIRHTNPGSLKLCVYEGVRNTSLSNAYAMDISKLISADIVLTTYDVLKEDLSHDSDRHEGDRRIMRFQKRYPVIPTRLTRIFWWRVCLDEAQMVESNAAAATEMALRLHARHRWCVTGTPIQRRLDDLYGLLRFLEASPFNIPRWWIEVIRDPYESRDPGAMEFTHKFFKQIMWRSSKLHVADELQLPPQEECLSWLSFSPIEEHFYHRQHETCVHYAHEVIESFRDHIFKKEVPGCVSSNSPSDLFITHAEAGKLLNSLLKLRQACCHPQVGSSGLRSLQQAPMTMEEILSVLVSKTKIEGEEALRKSVVALNGLAGIAIIKQDISQAVSLYKEALALAEEHSEDFRLDPLLNLHIHHNLTEILPLPSESSHHSKGGEFPRSAEEKASKIHNVEQCDQYMAKRQKVGGEYHSGLNGEERELPCSTSNLSEDGVNDNIECDAEPHISSRLFNDGCLRTTCENIKQKFLSLFSSKLSVAQQELKKSYMQVCDSLNDGKNQHSVWWLEALTQIEQNKDASGELIKKIGDAVSGPLNNARSSRIDSCFRSINALMYHIQTGLDSLEASRQTLVDRLLEINQTMESPREEDIDRVRYCPNCQANGDGPLCVHCELDELFQGYEARLFRLNKAHGGMITSAEEAVDLQKKISALNRFYRTCSQSNKNSTPSNVGNKENMRKRDVGEKLVVSKSPSELEVVLGVIKSSCKAQLGREGQSEATKQLLLLEGMRKEYAHARSLAIAQAQVLRAHDEIKMATSRLRLREDENDKSIDALSLNELDAAIVENSSERLMSLTLLSRIKGQLRYLKGLVLSKQKLQLESPNNASLTQDTATLLISCPVEEKNKCIRETDDEACPVCQEKLSNRRMVFQCGHVICCNCLFAMTEKRLVHHGKFQDKWLMCPTCRQHTDVGNIAYADDRQTKSCDSAELHTVQSVEKSEASVIVQGSYGTKIEAVTRRILWIKCTEPKAKILVFSSWNDVLNVLEHALNANNITYVRMKGGRKSHVAISHFRRQRTSAEGNGQTHAQQPEPEPEFVQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQENRTLVHRFIVKDTVEESIYKLNRSRNTNSFISGNTKNQDQPLLTLKDLEALFTPVPSSVPQSEEKPTGSLMHLPPSVAAAIAAERRLKQQAT* 1693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0210 1692 ProSiteProfiles Zinc finger RING-type profile. 1372 1422 IPR001841 -
Vvi13g0210 1692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1366 1436 IPR013083 -
Vvi13g0210 1692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 693 IPR027417 -
Vvi13g0210 1692 MobiDBLite consensus disorder prediction 1 44 - -
Vvi13g0210 1692 MobiDBLite consensus disorder prediction 443 471 - -
Vvi13g0210 1692 SMART ring_2 1372 1421 IPR001841 -
Vvi13g0210 1692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 1652 IPR027417 -
Vvi13g0210 1692 SMART helicmild6 1499 1598 IPR001650 -
Vvi13g0210 1692 SUPERFAMILY RING/U-box 1362 1426 - -
Vvi13g0210 1692 MobiDBLite consensus disorder prediction 889 909 - -
Vvi13g0210 1692 SMART ultradead3 285 666 IPR014001 -
Vvi13g0210 1692 Coils Coil 384 404 - -
Vvi13g0210 1692 MobiDBLite consensus disorder prediction 443 464 - -
Vvi13g0210 1692 CDD PHD_TCF19_like 409 450 - -
Vvi13g0210 1692 Gene3D - 1437 1668 IPR027417 -
Vvi13g0210 1692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 452 IPR013083 -
Vvi13g0210 1692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1471 1643 IPR001650 -
Vvi13g0210 1692 MobiDBLite consensus disorder prediction 10 24 - -
Vvi13g0210 1692 SMART PHD_3 407 491 IPR001965 -
Vvi13g0210 1692 SUPERFAMILY FYVE/PHD zinc finger 404 444 IPR011011 -
Vvi13g0210 1692 CDD SF2_C_SNF 1465 1609 - -
Vvi13g0210 1692 CDD DEXQc_SHPRH 289 697 - -
Vvi13g0210 1692 Pfam SNF2-related domain 292 793 IPR000330 GO:0005524|GO:0140658
Vvi13g0210 1692 ProSitePatterns Zinc finger RING-type signature. 1388 1397 IPR017907 -
Vvi13g0210 1692 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1690 - -
Vvi13g0210 1692 Pfam Helicase conserved C-terminal domain 1470 1598 IPR001650 -
Vvi13g0210 1692 Gene3D - 485 717 IPR038718 -
Vvi13g0210 1692 Gene3D - 324 388 IPR038718 -
Vvi13g0210 1692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 488 659 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0210 Vvi-Chr13 1752121 1775361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0210 504 791 RAD5 or RAD16-like Gene Family AT5G22750 32.333 9.31e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi13g0210 SNF2_N 3.2e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0210 K15710 - vvi:100248506 3387.82