Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0208 ATGGAGAAAGAGCTCCTTGAGTTGTTCGAAGCCACGAAAAAAGCGGCGGACGCTGCTGCCGTTAACAGCGGAGCTCCGTCTGAAGAGGAACGATGCCTTGACGCTTTGAAGCAACTCAAGGATTTTCCGGTCACCTACCAGGTTCTCGTTTCCACTCAGGTTGGGAAGCGACTTCGGACCCTCACAAAACATCCTACGAAGAAGATTCAGGCTTTGGCTTCTGACCTAATTGATATATGGAAGAACATAGTTATTGAGGAAACGACTAAAAATAAGAAAAATGGAGATTTGGAGGATAAAGAATCTCCAAAACCTGTTACTGCAAATCCAGAGAATGTCAAGGCAACTCCCCTTCTAAAGGTTTCAAAAGCTGAAAATATCAAGGTTGAGAAGCAAACGTCTGGTGTGAAGAAGCCATCGCATAATATTGTTGGTCCCCCAAAGCTGACTTCTATAAGCAAATGTAACGATGCTTTGCGGGACAAAGTCCGGGAACTGCTTTCTGAGGCTTTATCCAAAGTTGTTGGTGAAGCTGATGAAGATATTATGGATGCAGTGAATGCATGTGACCCCATCCGAGTTGCTGTTTCAGTGGAGTCTGTAATGTTTGAAAAATGGGGTCGATCCAGTGGAGCCCACAAGTTAAAATATAGATCTCTAATGTTTAATATTAAGGACGCAAAGAACCCAGATCTCCGGAGAAAAGTACTTCTTGGACAAGTGATGCCTGAGAGACTTCTTGAAATGGGCCCAGAAGAAATGGCAAGCGATCGACGACAGCTTGAGAACCAACAAATCAAAGAGAAGGCTTTATTTGACTGTGAGCTCGGAGCTGCTCCAAAAGCCACAACTGATCAATTCAAGTGTGGTCGATGTGGGCAACGCAAGACTACTTACTACCAGTTGCAAACTCGGAGTGCTGATGAACCTATGACTACCTTTGTGACGTGCGTAAACTGCAATAACCATTGGAAGTTCTGTTAA 984 0.4431 MEKELLELFEATKKAADAAAVNSGAPSEEERCLDALKQLKDFPVTYQVLVSTQVGKRLRTLTKHPTKKIQALASDLIDIWKNIVIEETTKNKKNGDLEDKESPKPVTANPENVKATPLLKVSKAENIKVEKQTSGVKKPSHNIVGPPKLTSISKCNDALRDKVRELLSEALSKVVGEADEDIMDAVNACDPIRVAVSVESVMFEKWGRSSGAHKLKYRSLMFNIKDAKNPDLRRKVLLGQVMPERLLEMGPEEMASDRRQLENQQIKEKALFDCELGAAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0208 327 ProSiteProfiles Zinc finger TFIIS-type profile. 285 325 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi13g0208 327 SMART mid_6 157 265 IPR003618 GO:0006351
Vvi13g0208 327 NCBIfam transcription elongation factor S-II 13 327 IPR006289 GO:0003676|GO:0005634|GO:0006368
Vvi13g0208 327 SUPERFAMILY Elongation factor TFIIS domain 2 148 257 IPR036575 GO:0006351
Vvi13g0208 327 ProSitePatterns Zinc finger TFIIS-type signature. 289 324 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi13g0208 327 SMART Cys4_2 287 326 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi13g0208 327 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 96 IPR035441 -
Vvi13g0208 327 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 18 327 - -
Vvi13g0208 327 FunFam Probable Transcription elongation factor S-II 256 327 - -
Vvi13g0208 327 CDD TFIIS_I 27 84 - -
Vvi13g0208 327 ProSiteProfiles TFIIS N-terminal domain profile. 10 87 IPR017923 -
Vvi13g0208 327 SUPERFAMILY Zinc beta-ribbon 265 325 - -
Vvi13g0208 327 ProSiteProfiles TFIIS central domain profile. 159 282 IPR003618 GO:0006351
Vvi13g0208 327 SMART TFS2_5 8 86 IPR003617 GO:0005634
Vvi13g0208 327 Pfam TFIIS helical bundle-like domain 35 84 IPR017923 -
Vvi13g0208 327 Pfam Transcription factor S-II (TFIIS) 287 325 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi13g0208 327 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Vvi13g0208 327 Gene3D - 137 255 IPR036575 GO:0006351
Vvi13g0208 327 PIRSF TFIIS 2 327 IPR035100 -
Vvi13g0208 327 Pfam Transcription factor S-II (TFIIS), central domain 156 273 IPR003618 GO:0006351
Vvi13g0208 327 Gene3D - 256 327 - -
Vvi13g0208 327 CDD Zn-ribbon_TFIIS 280 326 - -
Vvi13g0208 327 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0208 Vvi-Chr13 1747994 1750412 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi13g0208 TFIIS_M 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0208 K03145 - vvi:104881085 642.499