Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0206 ATGCTATCATCGCCTGTGCTGAGGTGCAGAGCGGCTTCGGTGAGGATGCTCTTCTCTTGTTCCTCACACCTCTGCCCTAACCCTAACCCCAGCCTCCACCGCACCATGAAAGCCGCCACCGAAGCTTCCAGAACTCCACACCTCTCCCTCTTTTCCAACCCCATGGTCCCCAATTCCAATTCCAGTTCCCAGGCTTTTCCCCAGAGCATCACTCTCTCTAAATGCTTCTCTGTGACCCCCGCTTCTCCCGTTGTAGCTTCAGAAGATTCAGAGGTCCAGTCAAGGGACTCCCTCGTGGTGGTCTCCTTCTATAAGTTCGCCGATTTTCACGACCACGCGGATTTGCGAAAGCCTTTGAAGGCCCTCTGTGAGGAACTGCGTGTTTCAGGTGGTATTATTCTTGCACCAGAAGGAATCAACGGCAGCATATGTGGGACGAGGGAATCAGTGGAAAGAGTTCTTGAATTCGTTCAAACAGATGACCGCCTAAAAGGGCTAAGGCAGATTGAGTCACCTGTGAGTCCTGAGGAAGAAGCAATCCATCATGGACACAGTAACAGTTCTCCTCTTGCAGCAGGGGAAGATGCACCCTTCCGGTGGGATCATGTCAGGGTCAAGTTGAAGAAAGAGATTGTTTCTCTTGGAATGCCTACTGTGTCACCTACCGAAAGAGTTGGGAAGTATGTAAGCCCAAGGGATTGGAATGCATTGATTAGTGATCCAGATGTGGTGGTGATTGATGTGCGCAATGACTATGAAACTAGAATTGGGAGGTTCAAAGGGGCAGTTGATCCATATACCACAGCATTCCAGGAATTCCCATCTTGGGTGGAGGATCAGTTCCAACTTGCTGAACCAGATGGCCAGCATTCTCAGGTGGAGGCAAATGATTCAAATGGAAGCCCTAAGAAACAAGCAGAGGTTCAAGGAGAGAAAATGCCACCACGGGTTGCCATGTACTGCACAGGTGGGATACGGTGTGAGAAAGCTTCAAGTTTTCTCCTTAGCAAAGGTTTCAAAGAGGTTTATCATTTGGAAGGTGGGATTCTGAAATACCTAGAGGAAGTTCCAGAGACCGAAAGCCTTTGGGAGGGCGAGTGCTTTGTGTTCGACAAGCGGGTCTCTGTCGACCATGGCTTAGCTCAGGGAACTTTCAAGCTTTGCTATGGGTGCAAGAAACCAGTGAGCGATGCCGACATGGAAGCCCCCGAGTGGGAGTATGGAGTCTCTTGTCCATACTGTTACTCATCAAAATCTAATGAAGAGAAAGAGAGGGCCAGAGCTCGACAAAGGCAATTTGAGACATGGGGCATCATCGGCGGTCCGGACAAAGGCCGCGGGCCAACGGTAAAGAAGGATGACAGTGAGAGGTGTGAGAACCAGCTCTCAAATTCAGTTTAG 1401 0.5004 MLSSPVLRCRAASVRMLFSCSSHLCPNPNPSLHRTMKAATEASRTPHLSLFSNPMVPNSNSSSQAFPQSITLSKCFSVTPASPVVASEDSEVQSRDSLVVVSFYKFADFHDHADLRKPLKALCEELRVSGGIILAPEGINGSICGTRESVERVLEFVQTDDRLKGLRQIESPVSPEEEAIHHGHSNSSPLAAGEDAPFRWDHVRVKLKKEIVSLGMPTVSPTERVGKYVSPRDWNALISDPDVVVIDVRNDYETRIGRFKGAVDPYTTAFQEFPSWVEDQFQLAEPDGQHSQVEANDSNGSPKKQAEVQGEKMPPRVAMYCTGGIRCEKASSFLLSKGFKEVYHLEGGILKYLEEVPETESLWEGECFVFDKRVSVDHGLAQGTFKLCYGCKKPVSDADMEAPEWEYGVSCPYCYSSKSNEEKERARARQRQFETWGIIGGPDKGRGPTVKKDDSERCENQLSNSV* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0206 466 Gene3D - 86 212 - -
Vvi13g0206 466 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 208 387 IPR036873 -
Vvi13g0206 466 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 91 441 IPR020936 -
Vvi13g0206 466 CDD RHOD_YceA 226 354 - -
Vvi13g0206 466 Pfam Rhodanese-like domain 234 354 IPR001763 -
Vvi13g0206 466 MobiDBLite consensus disorder prediction 286 305 - -
Vvi13g0206 466 Pfam UPF0176 acylphosphatase like domain 99 211 IPR040503 -
Vvi13g0206 466 MobiDBLite consensus disorder prediction 286 311 - -
Vvi13g0206 466 Hamap tRNA uridine(34) hydroxylase [trhO]. 96 398 IPR020936 -
Vvi13g0206 466 ProSiteProfiles Rhodanese domain profile. 239 361 IPR001763 -
Vvi13g0206 466 SMART rhod_4 229 358 IPR001763 -
Vvi13g0206 466 Gene3D - 213 396 IPR036873 -
Vvi13g0206 466 MobiDBLite consensus disorder prediction 436 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0206 Vvi-Chr13 1738803 1741956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0206 97 466 Sulfurtransferasese or Rhodanese AT2G40760 75.538 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0206 - - vvi:100253612 938.332