Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0205 ATGGGAACTTCTCCTCCAGAAAGGCTTTCCACTGATCGGAAAAGGGTGGTTGGGGAGCTGGTTCATGGCCGGGATCTGGCGAACCAGTTGCAGATTCTGCTACGTGAGCCCTTTTCCGATCAGGGGTCGGTGTCAGCTGAGGATCTGGTGGTGAAGATCTTGAGATCCTTCACGGAGGCTCTCTCTGTGCTGAGGTGTTATGACCAGTCCGGCGATGCCGGCGGGGAGAGTCCGGCGGAGAGTGGGAACTACAAGGTGTTGAAGAACAGGCGGGGCTGTTACAAGAGGAGAAAAAATTCTGAAACATGGACTGCGGTCTCCTCCACTATAGAAGATGGCCATGCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAGGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAAACAAGTACAAAGAATGAAGGAGAATCCCATAATGTATCACACAACATACATTGGCCACCATACTTGCAGAGATATTCTCAAGGCTCCCCAGTTCATTGGAAGCTCTTATCCTGGCTATGATTCTAATAATATGGTTGGGTCTGAATCAAAGATCCCAGAAGAAGTTCAGGAAATGAAACCAGAACTTATAAAGGAGGAGACAGTGGTGAGTGATCTCACTTCAGACAATGTTTCTTCAATGGATTCTATCAATTTATGGTCAGGTTTAGAGGCTTTGGACTCATTCATGCCCGCAATGGTTACTCAAAGAGGGGGGTCTGATGATCATGGGAATCAAGATCAGAATGTGGATTCCACCATGTATTCAAGAAATGCAACCACCACTACTACTGCTACTACTGCTTCTCATAATACTGACATGGACTTTGTGCTTGGGTGTCTGGATTTTGAAGGTGATGATCAGTTTCAGTTTGATGAAAGTCCTTTTCAGTTTTTCTAG 942 0.465 MGTSPPERLSTDRKRVVGELVHGRDLANQLQILLREPFSDQGSVSAEDLVVKILRSFTEALSVLRCYDQSGDAGGESPAESGNYKVLKNRRGCYKRRKNSETWTAVSSTIEDGHAWRKYGQKEILNAKFPRSYYRCTRKHEQSCRATKQVQRMKENPIMYHTTYIGHHTCRDILKAPQFIGSSYPGYDSNNMVGSESKIPEEVQEMKPELIKEETVVSDLTSDNVSSMDSINLWSGLEALDSFMPAMVTQRGGSDDHGNQDQNVDSTMYSRNATTTTTATTASHNTDMDFVLGCLDFEGDDQFQFDESPFQFF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0205 313 Gene3D WRKY domain 96 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi13g0205 313 SMART WRKY_cls 110 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi13g0205 313 Pfam WRKY DNA -binding domain 111 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi13g0205 313 SUPERFAMILY WRKY DNA-binding domain 107 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi13g0205 313 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 197 IPR044810 GO:0003700
Vvi13g0205 313 ProSiteProfiles WRKY domain profile. 105 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0205 Vvi-Chr13 1719507 1720803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0205 15 178 WRKY Transcription Factor Family AT3G56400 44.809 1.61e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi13g0205 WRKY 3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0205 - - vvi:100258754 625.55