Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0204 ATGGAGGAGACCCTTTCTCATATTGTTCGAGGGTGCAAGTTGGCTAGAGAGCTTGAATCAAACATCCCGAACCTCGCCAAGCAGCCCAGGATGCTGGCCAAGTCCTGTGATGAGATCATGAAGATTTTCGGGACTGCGAAGGAGAGGCTGAATGCTCAGGATGACCACTCGGCATATCCCTACATGTTTGCGCAGGCCTCGGGGATGGAGACCAGTGGGGAAATGCAGGAATGGCTGAAGACAAGCTACCTGCAAGCGCTCCAAGCACAGTATGGCTTGACAGAGAGCAAGGTAGGTGGGATCGAACCTGTGACCTTGTCGGGTCATCCTGGTTTTGAGCTGGGTGGACGGGATAGGGAAGGCTCAGCCAGATCAACAGGCAGCGGAGGAGAGTTTCAGGCAATGGAAGGATCAGATTCCGGGAATAGTAATTCGCAAAGATTACGAAGAAGAAAGGATGATATAAGGAAAAGGAAGGAGACAGTAGCAGCGCCTAGAATTGGGAACACTGATATTCCTCCGGATGACAATTTTACTTGGAGAAAATATGGGCAAAAGGAGATCCTGGGATCAAAGTACCCAAGGAGTTACTATAGATGCACCCACCAGAAACTATACAACTGTCCAGCCAAGAAACAAGTACAGCGGCTCGAACATGATCCCTTCATGTTTGATATAACTTATATAGATGATCACACCTGCCACAAGTCTGCCACAGCTCCTTCAGTCCCACCGCCTCCACCAGAAGTGACACCTGAGATGATTCAGGCCACAACTGCACAACTGCCCATGGGGAGGTGGCTCTCCATGGAACTCAAGCCAACAGGAGAAGCCGCAAATGCCTTTGTAGATCATTCCCAAGTTCAAATGCACGTAGACTTGGGTCTAGGCGAGGGAAGCAGCAGCAGCATGGTTGGCACTGGGGGAAGTACTGCAGGTCCTTCCATGGTTCGATTCGGGCGAGAAGCGGAATATCCAGTGGTGGATCTCGCTGATACAATGTTCAATTCTGGTAGCAGTAGTAGCAATAGCATGGACTTCCTCTTCACTCACACGGAGGAAAAATGGGAGCCGGCTGGTGACAAGAAAAACTGA 1095 0.5032 MEETLSHIVRGCKLARELESNIPNLAKQPRMLAKSCDEIMKIFGTAKERLNAQDDHSAYPYMFAQASGMETSGEMQEWLKTSYLQALQAQYGLTESKVGGIEPVTLSGHPGFELGGRDREGSARSTGSGGEFQAMEGSDSGNSNSQRLRRRKDDIRKRKETVAAPRIGNTDIPPDDNFTWRKYGQKEILGSKYPRSYYRCTHQKLYNCPAKKQVQRLEHDPFMFDITYIDDHTCHKSATAPSVPPPPPEVTPEMIQATTAQLPMGRWLSMELKPTGEAANAFVDHSQVQMHVDLGLGEGSSSSMVGTGGSTAGPSMVRFGREAEYPVVDLADTMFNSGSSSSNSMDFLFTHTEEKWEPAGDKKN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0204 364 Gene3D WRKY domain 156 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi13g0204 364 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 245 IPR044810 GO:0003700
Vvi13g0204 364 Pfam WRKY DNA -binding domain 175 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi13g0204 364 SUPERFAMILY WRKY DNA-binding domain 172 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi13g0204 364 MobiDBLite consensus disorder prediction 145 164 - -
Vvi13g0204 364 MobiDBLite consensus disorder prediction 102 176 - -
Vvi13g0204 364 ProSiteProfiles WRKY domain profile. 175 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi13g0204 364 SMART WRKY_cls 174 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi13g0204 364 MobiDBLite consensus disorder prediction 126 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0204 Vvi-Chr13 1716836 1718836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0204 1 349 WRKY Transcription Factor Family AT2G40740 38.227 4.75e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi13g0204 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0204 - - vvi:100263918 707.983