Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0203 ATGTTTTCGAATCGTTCGAAGTTTAACGGCCGACACGACCAAGCCACGGCACGACGGCTAAAATCAGGAAGGCTACAGCGTAACACACAGCACCGCGAAGCACTGAATAACAACCACTACAATTCAGTTTTTTCCACATTTGCATCAGAGAGTGAGCGAGAGAGAATAATAGAATTAGAATTTAGAAACTTCTCTGAGAAGATCGAAGAGGGAGGGAGAGGGAGAGGGAGAGATAGCGGTGGTCTCATCTGTCTTTGGGATCGATCGAAGATGCTGAAGTTCTTGAAGGGCGTGGTAGCTGGATCTGGAGCCGGCCTCAAAGATCTGCCCTACAACATCGGCGAGCCCTACTCATCCGCCTGGGGCTCCTGGACTCACTCTCGTGGCACCTCTAAGGATGATGGGTCTCCCGTGTCTATATTTTCTCTTTCAGGAAGTAATGCTCAGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAGTCAGGCATCCAAATATTTTATCATTTCTGCACAGTACTGAGGCTGAGACTTTTGATGGTTCTAGTACAAAAGTTACTATCTATATTGTCACTGAGCCTGTAATGCCACTGTCTGAAAAGATCAAGGAATTAGGTTTAGAAGGTACACAAAGGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTAGTTCATGGTAATGTTTGCTTGGCCAGTGTTGTTGTCACTCAAACTCTGGACTGGAAGCTGCATGCTTTTGACGTTCTATCTGAGTTTGATGGCCATAGCGAAGCTGCTACTGGGCCCTTGTTGCAATATGAATGGCTTGTTGGTTCACAATACAAACCAATGGAGTTGCTAAAGTCTGACTGGGCAGCAATCAGGAAATCTCCACCATGGGCCATTGATTCTTGGGGCTTGGGTTGTCTCATTTATGAGCTTTTCTCTGGCATGAGATTGGGGAAAACTGAAGAGCTACGTAACACTGCTTCCATTCCAAAGTCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGAATATTTCCAAAATAAGTTAGTGGATACTATACATTTCATGGACATTCTTAATTTGAAGGACAGTGTTGAAAAGGATACCTTCTTCCGTAAGCTTCCAAATCTAGCAGAGCAGCTTCCTCGCCAAATAGTGCTGAAAAAGTTACTTCCTATGTTGGCCTCCGCTTTAGAATTTGGTTCAGCTGCTGCTCCTGCCTTGACTGCACTATTGAAAATGGCTTCTTGGCTTTCAGCTGAAGATTTCAGTGCCAAGGTACTTCCGACAATTGTGAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAGTTTATACTCATGTTGCTACTGGGTTCTCAGACACGTCTGCTTTTCTTCGGGAATTGACACTTAAATCCATGCTTATTCTTGCTCCTAAGCTGTCTCAACGCACTATTTCAGGATCATTGTTGAAGTATCTCTCAAAGCTTCAGGTTGATGAAGAACCTGCTATTAGAACAAATACAACCATATTACTTGGAAACATTGCCAGCTACCTTAATGAAGGGACTAGGAAAAGAGTTTTGATAAATGCATTTACAGTTCGTGCATTGCGTGATACTTTCTCTCCTGCCCGAGGAGCAGGAGTTATGGCTTTATGTGCGACCAGTTCTTATTATGACATCACAGAGATTGCAACTCGGATTCTGCCAAATGTTGTTGTACTTACCATTGATCCTGACAGTGATGTTCGATCAAAGGCATTTCAAGCTGTTGACCAATTTTTGCAGATAGTTAAGCAATACCATGAGAAGACAAATGCTGGAGATACCACTGGGTCAAGCATGGGAATCTCATCAATACCAGGAAATGCTAGCTTACTTGGATGGGCCATGAGTTCCTTAACTCTCAAGAGCAAACCTTCAGAACAAGCTCCACTGGCTCCTGCTAATTCTAGTGCACCTCTTGCTTCGGCAAGCTCAAATGACAGCTCAGTGATGGATACTGCAACTCCAGCATCGATCAACGTAAGTTCCCCCACCGATTTTTCTGATCAAGCTGTTCCGGCATCCCCTACATCCACTGATGGCTGGGGAGAGCTTGAAAATGGAATTCATGAAGAGCATGAGAGTGACAAAGATGGTTGGGATGATATTGAGCCACTTGAAGAGCCAAAGCCACCTTCAGCTCTTGCCAATATCCAAGCAGCTCAAAAGCGGCCTGTATCACAACCAAAACCACAAGTCCCAAGTCGACCAAAAATTCCACCAAAGGTGAGTAAAGACGAAGATGACGACTTGTGGGGATCCATAGCTGCCCCTGCTCCAAAAACAGCATCAAAACCACTCAACGTAAAAACTGCTGGAGCAGTTGATAACGATGATCCCTGGGCTGCCATTGCTGCCCCCCCACCCACAACCAGGGCCAAACCTTTATCAGCTGGCAGAGGCAGAGGAGCCAAACCCGCTGCTCCGAAGTTGGGAGCACAGAGGATAAACCGGACATCCTCATCCGGGATGTAA 2655 0.4542 MFSNRSKFNGRHDQATARRLKSGRLQRNTQHREALNNNHYNSVFSTFASESERERIIELEFRNFSEKIEEGGRGRGRDSGGLICLWDRSKMLKFLKGVVAGSGAGLKDLPYNIGEPYSSAWGSWTHSRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEAETFDGSSTKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGHSEAATGPLLQYEWLVGSQYKPMELLKSDWAAIRKSPPWAIDSWGLGCLIYELFSGMRLGKTEELRNTASIPKSLLPDYQRLLSSMPARRLNTSKLIENSEYFQNKLVDTIHFMDILNLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPMLASALEFGSAAAPALTALLKMASWLSAEDFSAKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQIVDEQVYTHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFSPARGAGVMALCATSSYYDITEIATRILPNVVVLTIDPDSDVRSKAFQAVDQFLQIVKQYHEKTNAGDTTGSSMGISSIPGNASLLGWAMSSLTLKSKPSEQAPLAPANSSAPLASASSNDSSVMDTATPASINVSSPTDFSDQAVPASPTSTDGWGELENGIHEEHESDKDGWDDIEPLEEPKPPSALANIQAAQKRPVSQPKPQVPSRPKIPPKVSKDEDDDLWGSIAAPAPKTASKPLNVKTAGAVDNDDPWAAIAAPPPTTRAKPLSAGRGRGAKPAAPKLGAQRINRTSSSGM* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0203 884 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 100 862 - -
Vvi13g0203 884 Gene3D - 372 652 IPR011989 -
Vvi13g0203 884 SUPERFAMILY Protein kinase-like (PK-like) 128 377 IPR011009 -
Vvi13g0203 884 Gene3D Phosphorylase Kinase; domain 1 102 197 - -
Vvi13g0203 884 MobiDBLite consensus disorder prediction 745 768 - -
Vvi13g0203 884 SUPERFAMILY ARM repeat 383 644 IPR016024 -
Vvi13g0203 884 ProSiteProfiles Protein kinase domain profile. 92 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0203 884 ProSiteProfiles HEAT repeat profile. 613 651 IPR021133 -
Vvi13g0203 884 MobiDBLite consensus disorder prediction 1 26 - -
Vvi13g0203 884 MobiDBLite consensus disorder prediction 685 742 - -
Vvi13g0203 884 SMART serkin_6 65 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0203 884 Gene3D Transferase(Phosphotransferase) domain 1 199 369 - -
Vvi13g0203 884 Pfam Protein kinase domain 133 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0203 884 MobiDBLite consensus disorder prediction 685 884 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0203 160 412 MAP Kinase Kinase Kinase AT5G66850 25.271 2.43e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Vvi13g0203 Pkinase 2.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0203 K08876 - vvi:100263836 1508.43