Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0200 ATGGATGCTGCTTCTTCTTCTTCAGCTAACGACATGATGGTTATGGATTATGGGGATGAACCCCATGTTCTTGCCGTCGACGATAATCTCATTGACCGCAAGCTCATTGAGAAATTGCTCAAGAACTTCTCTTGCAGAGTGACCACTGCAGAAAATGGGCTGAGGGCTTTGGAGTATCTGGGTTTGGGTGATAATCAACAGACCAGCCACAAAGCCAGTGTTTCAAAGGTGAATTTGATAATTACAGACTACTGTATGCCAGGAATGACAGGCTATGAGCTGCTCAAGAGAGTCAAGCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAAGTGCCTGGAGGAAGGAGCTCAAATGTTCATGCTAAAGCCCCTCAAGCAGTCTGATGTGAAGAAACTAAGATGTTACTTGAAGCACAGAAGCTAA 462 0.4416 MDAASSSSANDMMVMDYGDEPHVLAVDDNLIDRKLIEKLLKNFSCRVTTAENGLRALEYLGLGDNQQTSHKASVSKVNLIITDYCMPGMTGYELLKRVKQSSILKEVPVVIMSSENIPTRINKCLEEGAQMFMLKPLKQSDVKKLRCYLKHRS* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0200 153 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 149 IPR045279 GO:0009736
Vvi13g0200 153 ProSiteProfiles Response regulatory domain profile. 22 150 IPR001789 GO:0000160
Vvi13g0200 153 Pfam Response regulator receiver domain 23 144 IPR001789 GO:0000160
Vvi13g0200 153 Gene3D - 22 153 - -
Vvi13g0200 153 SMART REC_2 21 146 IPR001789 GO:0000160
Vvi13g0200 153 SUPERFAMILY CheY-like 20 143 IPR011006 -
Vvi13g0200 153 FunFam Two-component response regulator ORR5 21 152 - -
Vvi13g0200 153 CDD REC_typeA_ARR 23 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0200 Vvi-Chr13 1666153 1667360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0200 8 149 Response Regulator Gene Family AT3G56380 74.825 3.74e-72 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi13g0200 Response_reg 4.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0200 K14492 - vvi:100246693 301.212