Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0198 ATGGCGTATCTACTCGGTGTATTGTTAGCTTTGCTCGTTGTGGCTCCGAGTTGTGTGAAATCTCTGAACCCATCTCTGAATGATGATGTTCTGGGCTTGATTGTGTTCAAGGCCGATATTCAAGATCCAAATTCGAAGTTGGCATCTTGGAATGAAGATGATGATAGTCCCTGCAACTGGGTTGGGGTCAAATGCAACCCCAGATCCAACCGGGTCACCGACCTCGTTCTCGACGGTTTTTCCCTTTCGGGGAAGATAGGCAGAGGCCTACTCCAGTTACAGTTTCTCCGGAAATTGTCGCTGGCGAAGAATAATATCACTGGAAGCATAGGCCCCAATCTTGCCCGCCTTCAGAACCTGAGATTTATTGATTTAAGTGAGAACAGTCTGTCTGGAACCATCCCAGATGATTTTTTCAAACAATGTGGGTCTTTGCATGCTATCTCTTTGGCCAAGAACAAGTTTTCCGGGAAGATCCCGGAGAGTGTAGGTTCATGTTCAACGCTTGCTGCAATTGACTTCTCCTCTAATCAGTTTTCGGGTCCATTACCTTCTGGCATTTGGTCTTTGAACGGGCTTAGATCACTTGATTTGTCGGATAACTTGTTGGAGGGCGATATACCAAAGGGGATTGACAGTTTGTACAATTTGAGAGCTATTAACTTGAGCAAGAATCGGTTTTCTGGGCCGCTTCCAGATGGCATTGGAGGTTGTTTGCTTTTACGGTTAATTGATTTCAGTGAGAATTCTCTTTCTGGGAGCCTTCCAGGGACAATGCAGAAACTTACCTTGTGTAATTATATGAATTTACACGGGAATTCGTTTGAGGGCGAGGTTCCGGAGTGGATTGGAGAAATGAAAAGCCTGGAGACTTTGGATCTCTCAGCCAATAAATTTTCTGGCAGGGTTCCAACATCAATAGGGAATCTCAAGTCGTTGAAGGTACTGAATTTTTCGGTGAATGTTTTCAGTGGGAGCTTGCCAGAGTCTATGATCAATTGCGAACAGCTTTTGGTCTTAGATGTTAGTCAGAATTCGCTATTGGGTGATCTTCCTGCATGGATTTTCAAATTGGGATTGCAGAAAGTTCTGCTTTCAAAAAATAGCTTGAGTGGAAATATGGACAGCCCTTTCTCCTCATCAGTGGAGAAATCCCGTCAAGGGCTTCAAGTCTTGGATTTATCCTACAACGAATTATCCGGTGACTTTACATCATCCATTGGGGTTTTTAGAAGCTTGCAGTTCTTGAATATTTCCAGGAACTCCCTCGTGGGTGCTATTCCAGCAAGTATTGGAGATCTAAAGGCCTTAGATGTTCTTGATTTGAGTGAGAACCAGCTAAATGGAAGCATTCCTCTGGAAATTGGAGGAGCCTTTTCTTTGAAGGATCTGAGATTGAAGAACAACTTCCTAGCTGGAAAAATTCCTGTTTCTCTTGAGAACTGTTCTTCATTAACGACATTGATCCTATCACATAACAATCTGAGTGGCCCAATACCAATGGGGATTTCAAAGCTTAGCAACCTAGAAAATGTGGATTTATCTCTTAACAAGCTCACAGGAAGCCTGCCCAAGCAGTTGGCCAATCTTCCACACCTCATCTCCTTCAACATTTCCCACAATCAGCTCCAAGGTGAACTACCTGCTGGTGGCTTTTTCAACACCATTTCCCCTTCCTCTGTCTCTGGCAATCCATCTCTTTGTGGCTCTGCTGCGAATAAGTCTTGCCCTGCTGTACTTCCCAAGCCCATTGTCCTTAACCCCAATTCTTCCTCTGACACCACTGCGGGTGCATTCCCTCGAAGTCTTGCTCACAAGAAAATCATCCTCAGCATTTCTGCACTCATTGCCATTGGTGCTGCTGCTGTCATTGTAATTGGTGTGATTGCCATCACCGTTCTTAATCTCCGCGTCCGATCTTCTGCATCTCGTTCTGCAGCAGCTCTTGCGCTATCTGGTGGTGATGACTACAGCCATTCCCCTACTACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCGGGTGACCCTGACTTCAGCATGGGAGCACATGCTCTGCTCAACAAGGATTGTGAGCTCGGGCGAGGGGGGTTTGGAGCAGTCTACCGGACTGTTCTTCGAGATGGTCATCCAGTTGCCATCAAGAAGCTTACTGTCTCAAGTCTGGTCAAGTCCCAAGAAGATTTTGAAAGGGAAGTTAAGAAACTGGGAAAGATCCGGCACCAGAATCTTGTGGCACTTGAAGGGTATTACTGGACTCCATCATTACAGCTCCTAATATATGAATTCATCTCTGGTGGAAGTTTGTACAAGCATCTCCATGAAGGAGCAGGTGGCAACTTCACATGGAATGAGAGATTCAATATAATTCTTGGGACAGCTAAAAGCTTGGCTCACTTGCACCAAATGAGCATAATCCATTACAATCTAAAATCAAGTAACGTCCTCATCGACCCCTCAGGCGAACCTAAGGTGGCAGATTTTGGCCTAGCCAGGCTGTTGCCAATGCTAGATCGATACGTTCTAAGCAGCAAGATTCAGAGTGCACTAGGCTACATGGCACCTGAGTTTGCATGCAGGACAGTGAAGATAACTGAGAAGTGCGACGTTTATGGGTTCGGGGTTTTGGTTCTGGAAGTGGTTACTGGGAAGAGGCCAGTCGAATACATGGAGGATGATGTGGTGGTGCTCTGTGATATGGTCAGAGGAGCATTGGAAGAAGGTAAGGTGGAGGAATGTGTTGATGGGAGACTCCAAGGAAAATTCCCAGCTGAGGAGGCAATTCCTGTGATGAAGTTAGGCTTAATTTGCACTTCACAGGTGCCATCAAATCGGCCAGACATGGCAGAGGTGGTAAATATATTGGAACTGATCAGATGCCCTTCAGAAGGTCAAGAGGAGTTGATTTGA 2910 0.4553 MAYLLGVLLALLVVAPSCVKSLNPSLNDDVLGLIVFKADIQDPNSKLASWNEDDDSPCNWVGVKCNPRSNRVTDLVLDGFSLSGKIGRGLLQLQFLRKLSLAKNNITGSIGPNLARLQNLRFIDLSENSLSGTIPDDFFKQCGSLHAISLAKNKFSGKIPESVGSCSTLAAIDFSSNQFSGPLPSGIWSLNGLRSLDLSDNLLEGDIPKGIDSLYNLRAINLSKNRFSGPLPDGIGGCLLLRLIDFSENSLSGSLPGTMQKLTLCNYMNLHGNSFEGEVPEWIGEMKSLETLDLSANKFSGRVPTSIGNLKSLKVLNFSVNVFSGSLPESMINCEQLLVLDVSQNSLLGDLPAWIFKLGLQKVLLSKNSLSGNMDSPFSSSVEKSRQGLQVLDLSYNELSGDFTSSIGVFRSLQFLNISRNSLVGAIPASIGDLKALDVLDLSENQLNGSIPLEIGGAFSLKDLRLKNNFLAGKIPVSLENCSSLTTLILSHNNLSGPIPMGISKLSNLENVDLSLNKLTGSLPKQLANLPHLISFNISHNQLQGELPAGGFFNTISPSSVSGNPSLCGSAANKSCPAVLPKPIVLNPNSSSDTTAGAFPRSLAHKKIILSISALIAIGAAAVIVIGVIAITVLNLRVRSSASRSAAALALSGGDDYSHSPTTDANSGKLVMFSGDPDFSMGAHALLNKDCELGRGGFGAVYRTVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVALEGYYWTPSLQLLIYEFISGGSLYKHLHEGAGGNFTWNERFNIILGTAKSLAHLHQMSIIHYNLKSSNVLIDPSGEPKVADFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEECVDGRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELI* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0198 969 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 681 763 - -
Vvi13g0198 969 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 764 964 - -
Vvi13g0198 969 Gene3D Phosphorylase Kinase; domain 1 682 763 - -
Vvi13g0198 969 ProSiteProfiles Protein kinase domain profile. 687 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0198 969 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vvi13g0198 969 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Vvi13g0198 969 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 187 956 - -
Vvi13g0198 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 27 305 - -
Vvi13g0198 969 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Vvi13g0198 969 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Vvi13g0198 969 Gene3D Ribonuclease Inhibitor 27 303 IPR032675 -
Vvi13g0198 969 Gene3D Transferase(Phosphotransferase) domain 1 764 967 - -
Vvi13g0198 969 SUPERFAMILY L domain-like 42 374 - -
Vvi13g0198 969 SUPERFAMILY Protein kinase-like (PK-like) 690 959 IPR011009 -
Vvi13g0198 969 SUPERFAMILY L domain-like 287 560 - -
Vvi13g0198 969 CDD STKc_IRAK 693 958 - -
Vvi13g0198 969 Pfam Protein tyrosine and serine/threonine kinase 689 955 IPR001245 GO:0004672|GO:0006468
Vvi13g0198 969 SMART LRR_typ_2 434 458 IPR003591 -
Vvi13g0198 969 SMART LRR_typ_2 214 238 IPR003591 -
Vvi13g0198 969 SMART LRR_typ_2 506 529 IPR003591 -
Vvi13g0198 969 SMART LRR_typ_2 117 141 IPR003591 -
Vvi13g0198 969 SMART LRR_typ_2 190 213 IPR003591 -
Vvi13g0198 969 SMART LRR_typ_2 530 554 IPR003591 -
Vvi13g0198 969 SMART LRR_typ_2 286 310 IPR003591 -
Vvi13g0198 969 PRINTS Leucine-rich repeat signature 120 133 - -
Vvi13g0198 969 PRINTS Leucine-rich repeat signature 434 447 - -
Vvi13g0198 969 Gene3D Ribonuclease Inhibitor 304 579 IPR032675 -
Vvi13g0198 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 306 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0198 Vvi-Chr13 1642007 1645352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0198 7 968 Receptor kinase-like Gene Family AT3G56370 69.907 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vvi13g0198 PK_Tyr_Ser-Thr 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0198 - - vvi:100257029 1838.16