Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0196 ATGGCGTCGGAAGAAGTGGGTTTTGTGCCACCACAGAGGCTCGAAAATGGGTTGAATTCACAGCTCGTATTCCAGGATGAGGCGCTCCGGTTCAATTGTGGCGCGCCGCAGCGGCGAGTCGGCGATCCGGGACCGAAGACGCGAGAGCTGAGCAGTTTCATAGATGAAAAGATGTTTTGCGTGGAACGGGATCGGTATTTCCACCCGCAGGGCGGGGAATTCCGGCGGAGCATATACGGAGACGCCCCTCCGGAGCGGCCGGACGGCCGGAACTGGAATGGGAACGGGAACACGCCGACCCCAAGCGGCGAAGGATCGGAAGGCGAGGAGGATGATGATGAGGAGGAGGAAGACGACGATGACGAGGTTGATGAAGGTGATGGTGAAGTGGAAGGGCTTGTTGCGGTGGATGACGCCAATAAGAGTAACAATCATAGTAGTGGTAGCTTACATAGCAGTGCTGATAAGATTGGCAATGGGAAAGCGAAGGACCATTCTTCATTTGGGTCAAATAGGGATGTGTTGATGAAGGATGGCGCCATTGTTCTATCTACAAATAGTGCTAGAGCAAGTCCTAGTGAGAATCATCGGCAAGGACGAATTAGTCATTACCAGAATGCAGTTACAATTGCAGAACCTGATGGCGACATGTACTATTCACAGTTTTTGCAGGGCCCGGAGGGGTCTGCTCCTGGGCAGAAGGAATTAGCTGTGGAAAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTTCATTATCAACCGAGTCGGGGGAGTCTTTAAAGGCGATTCTTTCAGACCCTCTAACAGGTGCACTTATGGATGATGCAATGATATTACCTTGTGGACATTCCTTTGGAGGTGGTGGAATGCAACATGTCATTAAAATGAAAGCTTGTTCTACTTGTTCGCAACCATTTTCAGAAGACTCAGTGCAACCAAATCTCTCTCTCCGAGCTGCTGTACAGGCATTTCGCCGGGAAGAAGAGCTACAGGTTTACCGCACATCGAAAAGAAGAAGAGAGAGGTCTGACCAGGACAAGTGTAGCTATGGTGATTCAACTCTAATGGATACTCCAAGGGGTAGAGGCGTTCAGTTTCCATTTGCTGTTACCGACCGAGTTATAATAAAGGGGAACAAGAGGACACCACAGCGCTTTGTTGGACGTGAGGCTGTTGTAACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACATTGGATAATGCAGAGAGTGTTAAACTGCAGTATCGTTCACTCGCCAAGGTTCCAGATAATCCATCCTCAAAGCCAATGTTGAGCAAAATGACACCAAACTGGCTCTAG 1326 0.4925 MASEEVGFVPPQRLENGLNSQLVFQDEALRFNCGAPQRRVGDPGPKTRELSSFIDEKMFCVERDRYFHPQGGEFRRSIYGDAPPERPDGRNWNGNGNTPTPSGEGSEGEEDDDEEEEDDDDEVDEGDGEVEGLVAVDDANKSNNHSSGSLHSSADKIGNGKAKDHSSFGSNRDVLMKDGAIVLSTNSARASPSENHRQGRISHYQNAVTIAEPDGDMYYSQFLQGPEGSAPGQKELAVENGCGFSGRKDVSLSTESGESLKAILSDPLTGALMDDAMILPCGHSFGGGGMQHVIKMKACSTCSQPFSEDSVQPNLSLRAAVQAFRREEELQVYRTSKRRRERSDQDKCSYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPDNPSSKPMLSKMTPNWL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0196 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 12 434 - -
Vvi13g0196 441 MobiDBLite consensus disorder prediction 335 354 - -
Vvi13g0196 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Vvi13g0196 441 MobiDBLite consensus disorder prediction 71 171 - -
Vvi13g0196 441 MobiDBLite consensus disorder prediction 157 171 - -
Vvi13g0196 441 SUPERFAMILY RING/U-box 258 332 - -
Vvi13g0196 441 ProSiteProfiles U-box domain profile. 259 331 IPR003613 GO:0004842|GO:0016567
Vvi13g0196 441 MobiDBLite consensus disorder prediction 139 154 - -
Vvi13g0196 441 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0196 Vvi-Chr13 1617969 1622420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0196 207 441 Plant U-box Gene Family AT5G05230 60.669 9.80e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0196 - - vvi:100262140 828.165