Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0189 ATGGCGAGTCTACGCTGCATCAGTGGCCTATTTGGAGCTCGGCTTCCAAAACCTAGAAATCTCGACAACCCCATCTCTAAAACCCTCCCAAAATACTCATCGTCGTGGAAGATCGTATCACAAATGGCGGATCTTCCGACCCAGTTGGCTTTATCGCCGACTAGCTCTCTCAAAATCCAGAAAGGGGACATCACCAAGTGGTTCGTTGATGGCTCTTCCGACGCTATCGTTAATCCAGCAAATGAACGAATGCTTGGAGGTGGTGGTGCTGATGGAGCCATACATAGAGCTGCTGGTCCAGAGCTTGTAGCAGCTTGCTATAAGGTCCCAGAAGTTCGACCCGGAATTCGCTGCCCTACTGGAGAAGCAAGAATTACCCAAGGTTTTAAATTGCCTGCAGCTCATGTAATTCACACTGTTGGGCCAATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCCTGCCATATCTTGTGGTGTTTTTGGATATCCTTATGATGAAGCTGCCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAGGCAAATGAATTGCTCCAAAATTAA 696 0.4583 MASLRCISGLFGARLPKPRNLDNPISKTLPKYSSSWKIVSQMADLPTQLALSPTSSLKIQKGDITKWFVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELVAACYKVPEVRPGIRCPTGEARITQGFKLPAAHVIHTVGPIYDVDSNPEASLKSAYANCLSLAKENNVQYIAFPAISCGVFGYPYDEAATVAISTVKEFGKDLKEVHFVLFSDDIYNVWLNKANELLQN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0189 231 SMART YBR022w_8 56 194 IPR002589 -
Vvi13g0189 231 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 50 229 - -
Vvi13g0189 231 Pfam Macro domain 77 194 IPR002589 -
Vvi13g0189 231 Gene3D Leucine Aminopeptidase, subunit E, domain 1 17 231 IPR043472 -
Vvi13g0189 231 ProSiteProfiles Macro domain profile. 44 229 IPR002589 -
Vvi13g0189 231 SUPERFAMILY Macro domain-like 20 226 IPR043472 -
Vvi13g0189 231 CDD Macro_OAADPr_deacetylase 57 226 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0189 62 207 C2H2 Transcription Factor Family AT5G01310 29.560 8.95e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0189 K23518 - vvi:100267229 469.544