Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0188 ATGGCTACTGCAGCATTTTCTTCTATCTCTCTTGCCCTCTTTCTCTTCTGTCTATGCCTCCAAGGCACAAATGGTGACTATGGTGGGTGGGAAGGTGGGCATGCCACATTCTATGGCGGTGGTGACGCCTCAGGCACAATGGGTGGGGCTTGTGGGTATGGCAACTTGTACAGCCAAGGGTATGGGACCAACACTGCAGCTCTCAGCACCGCTCTCTTCAACAGTGGGCTGAGCTGTGGGGCATGTTACGAGATGAAATGCAACGATGACCCCAAATGGTGCCTCCCAGGGACCCTAACCGTGACTGCCACAAACTTCTGCCCTCCTAACTTGGCCTTGTCCAACACCAACGGCGGATGGTGCAATCCCCCCCTTCAGCACTTCGATCTAGCTGAGCCTGCCTTCCTTCAGATTGCCCAGTACCGAGCTGGAATCGTACCTGTGTCTTTCAGAAGAGTCCCCTGTGTGAAGAAAGGAGGGATCCGCTTTACCATCAACGGCCACTCCTACTTCAACTTGGTGCTCATCACAAACGTGGCCGGAGCGGGAGACGTCAGGGCAGTATCAATAAAGGGGTCTAAGACCGGGTGGCAGCCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACTCATACCTCAACGGCCAGACCCTCTCATTCCAAGTCACAGCAAGCGATGGCCGGACCATGACAAGCCTCAATGTGGCGCCTGCTGGCTGGCAGTTTGGGCAAACATATGAGGGGGCTCAGTTCTAA 759 0.5507 MATAAFSSISLALFLFCLCLQGTNGDYGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACYEMKCNDDPKWCLPGTLTVTATNFCPPNLALSNTNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVRAVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQTLSFQVTASDGRTMTSLNVAPAGWQFGQTYEGAQF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0188 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Vvi13g0188 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Vvi13g0188 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Vvi13g0188 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vvi13g0188 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Vvi13g0188 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vvi13g0188 252 CDD DPBB_EXPA_N 29 155 - -
Vvi13g0188 252 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Vvi13g0188 252 Gene3D - 159 252 IPR036749 -
Vvi13g0188 252 Gene3D - 18 155 IPR036908 -
Vvi13g0188 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Vvi13g0188 252 FunFam Expansin 160 252 - -
Vvi13g0188 252 FunFam Expansin 21 156 - -
Vvi13g0188 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Vvi13g0188 252 SMART dpbb_1 65 150 IPR007112 -
Vvi13g0188 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Vvi13g0188 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Vvi13g0188 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Vvi13g0188 252 PANTHER EXPANSIN-A15 12 252 IPR002963 GO:0009664
Vvi13g0188 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Vvi13g0188 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0188 Vvi-Chr13 1578700 1580132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0188 1 252 Expansin Gene Family AT2G40610 81.028 7.13e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0188 - K20628 vvi:100244917 530.02