Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0185 ATGCAAGATCCATCAAACCCTAACCCTATCTCTCACTCCCATAATGCTCACCAGCCTCCCTCGACGTCGTTTCCAAACACGGCCACCTCCCTCCGGGGAGGTCACCACCGGCGGGCACACTCCGAGGTCAATTTCCGGATCCCGGAAGACCTACATCTCGTCTCCGATCCCTTCGACGTTCCCTCGGCGAGCTTTGAGGAAATGGGATCCGAGGACGATCTCTTCTGCACATACATTGACATCGACAAGTTCGGATCCAGGCCCGAAGGGGACGCCCGGATCGACAATGCCGGCGGTGGTTTGGCTGCGGAGAGCGGCGACGGAGAGAAGAGCTCTAGGCCTCGGCACCGGCACAGCAATTCGGTGGACGGCTCGTCAATGTCGAGAGGGGAGAGTCTGTTTGTGGACACTATAGAGGCCAAGAAGGCAATGGCTCCAGATAAGCTCGCTGAGCTTTGGACGCTCGATCCGAAGCGAGCCAAGAGGATTCTGGCAAATCGGCAATCTGCTGCTCGCTCAAAAGAGAGGAAGGCTCGGTACATATTAGAGCTTGAAAGAAAAGTCCAGACCCTTCAAACAGAAGCAACCACTCTTTCTGCACAACTCACGCTTTTCCAGAGAGACACAACTGGCCTGACTACTGAAAACACAGAGCTTAAGCTTAGGTTACAAGCTATGGAACAACAAGCTCAACTACGTGATGCTCTGAATGAAGCACTAAAGAAGGAAGTAGAGAGGCTTAAGATTGCTACTGGAGAAATAATGACCTCCTCAGATGCATACAATTTGGGAATGCACCATGTTCCATATACTCAATCTTCTTTCTTCTCACACCAGTCACAACCAGGACCAAGTGAGTCCCAAAATATACAAATGCCACAGTTCCATCCATTCCCATCTAACATGTTGACCCACCACCAGCCTCTGCTTGGAGCAGCCCACTCAAATGCCCTCTCAGATATGTTGCAGCAGGATCCTCTTGGACGATTGCAGGGGCTTGATATCAGTAGCAGGGGCCCTAGTCTTGTGAAGTCTGAAGGCCCATCCATTTCTGCCAGTGAAAGCAGCAGCACATTTTAA 1080 0.5167 MQDPSNPNPISHSHNAHQPPSTSFPNTATSLRGGHHRRAHSEVNFRIPEDLHLVSDPFDVPSASFEEMGSEDDLFCTYIDIDKFGSRPEGDARIDNAGGGLAAESGDGEKSSRPRHRHSNSVDGSSMSRGESLFVDTIEAKKAMAPDKLAELWTLDPKRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLTTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEIMTSSDAYNLGMHHVPYTQSSFFSHQSQPGPSESQNIQMPQFHPFPSNMLTHHQPLLGAAHSNALSDMLQQDPLGRLQGLDISSRGPSLVKSEGPSISASESSSTF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0185 359 FunFam probable transcription factor PosF21 157 210 - -
Vvi13g0185 359 SUPERFAMILY Leucine zipper domain 158 209 IPR046347 GO:0003700|GO:0006355
Vvi13g0185 359 Coils Coil 174 201 - -
Vvi13g0185 359 MobiDBLite consensus disorder prediction 331 359 - -
Vvi13g0185 359 SMART brlzneu 154 218 IPR004827 GO:0003700|GO:0006355
Vvi13g0185 359 MobiDBLite consensus disorder prediction 342 359 - -
Vvi13g0185 359 Pfam bZIP transcription factor 158 207 IPR004827 GO:0003700|GO:0006355
Vvi13g0185 359 MobiDBLite consensus disorder prediction 87 128 - -
Vvi13g0185 359 MobiDBLite consensus disorder prediction 275 303 - -
Vvi13g0185 359 MobiDBLite consensus disorder prediction 1 38 - -
Vvi13g0185 359 Coils Coil 222 253 - -
Vvi13g0185 359 MobiDBLite consensus disorder prediction 275 301 - -
Vvi13g0185 359 CDD bZIP_plant_RF2 159 208 IPR044759 GO:0003700|GO:0006355
Vvi13g0185 359 MobiDBLite consensus disorder prediction 1 30 - -
Vvi13g0185 359 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 307 - -
Vvi13g0185 359 MobiDBLite consensus disorder prediction 108 122 - -
Vvi13g0185 359 Gene3D - 157 210 - -
Vvi13g0185 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 156 219 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0185 Vvi-Chr13 1562569 1569465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0185 1 359 bZIP Transcription Factor Family AT2G40620 57.215 4.77e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi13g0185 bZIP_1 1.7e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0185 - - vvi:100250056 690.649