Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0184 ATGGTGTCTCTTCAGAATCGTCCTCATCGTCTACTTCTTGACACAGACCCTGGTGCATCTCCAAACGTTGGAAGCAGGATGCGAAGCTCCTACACAAATGAGGCGAATTTTGATACCAACATGGTGATCATCCTAGCAGCCTTGCTCTGTGCATTGATATGTGCCCTTGGACTCAACTCAATTGTTCGCTGCGCTCTAAGATGCAGCAGGAGGCTTGCTTTTGAGACCGCAGATGAGACTGCCGCACGTCTAGCTGCAACAGGCCTCAAGAAGAGTGCGCTACGTCAGATTCCAGTGGCTGTATATGGCTCAGGGACAAACATCCCTGCCACTGACTGTCCTATTTGCCTAGGAGAATTCGAGCAAGGGGATAAAGTTCGAGTGCTCCCTAAATGTCACCATGGATTCCATATGAAGTGCATAGACACATGGCTGGTGTCACACTCATCTTGTCCAACTTGCAGGCACTCACTGCTAGAACACCCACCAGCTTCTGATGCAGTGGATGTGCATGTGGATACTGGAATTAGGCATCCTGGAAATGCACCAGGAGGGCAGCCTGATGTTTCTGTAGGTGTTGATGGGGAGATTTGA 594 0.4983 MVSLQNRPHRLLLDTDPGASPNVGSRMRSSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETADETAARLAATGLKKSALRQIPVAVYGSGTNIPATDCPICLGEFEQGDKVRVLPKCHHGFHMKCIDTWLVSHSSCPTCRHSLLEHPPASDAVDVHVDTGIRHPGNAPGGQPDVSVGVDGEI* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0184 197 CDD RING-H2_EL5-like 112 155 - -
Vvi13g0184 197 MobiDBLite consensus disorder prediction 1 26 - -
Vvi13g0184 197 MobiDBLite consensus disorder prediction 178 197 - -
Vvi13g0184 197 FunFam RING-H2 finger protein ATL72-like 80 159 - -
Vvi13g0184 197 PANTHER RING-H2 FINGER PROTEIN ATL78 26 162 IPR044602 GO:0016567|GO:0016740
Vvi13g0184 197 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Vvi13g0184 197 SMART ring_2 113 154 IPR001841 -
Vvi13g0184 197 Pfam Ring finger domain 112 155 IPR001841 -
Vvi13g0184 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 160 IPR013083 -
Vvi13g0184 197 SUPERFAMILY RING/U-box 95 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0184 Vvi-Chr13 1559166 1559759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0184 10 168 C3H Transcription Factor Family AT3G10910 58.333 9.04e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0184 - K19040 vvi:100243283 397.512