Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0178 ATGCCACTGCTCCCTCCTGGCCCAACTCCATGGCCATTAGTTGGGAACCTGCCTGAATTATTCACAAAAAAGCCGGTATTCCGGTGGATACTTGGACTTTTGGAGGAACTCAACACTGAGATTGCATGCATCAAACTGGGCAATGTCCATGTCATTCCCGTGATTTCGCCTGAGATTGCCAGGGAGATTTTGAAGGAACATGATGCAGTGTTTGCATCCAGACCTATTACAATGGCGTCCCATCACTTGAGCAGAGGGTTCCTGACAACAGCTCTTTCTCCATGGGGAGAGCACCATAATTTTACGGACTCATCGGTTGTGAATGTGAGAAATGCAGTCAGACAATACACAGGAAATGTGGTTAGGAAGATGATGTTCAGCAGAAGGTACTTTGGGGAAGGAAGGAAAGATGGAGGGCCTGGACTTGAAGAAGAAGAACACGTAAACTCCCTCTTTACCACGCTTGTTTACCTATATGTATTCTCTCCATCTGATTACCTTCCATGCCTGAGAGTCTTCGACTTAGATGGCCATGAGAAGATGGTAAAAGAGGCTTTGAGCATCATCAACAAGCATCATGATCCGATAGTGGATGAGAGAATAATACAATGGAGGAATGGGGAGAAGAAGGAGGTTGAGGACATACTCGATGTTTTCATTACAATCAGCGACACAAAGGGAAAACCATTGCTATCAGTAGAAGAGATCAAAGCCCAACTCATAGAACTGATGATTGAAATAGTGGACAATCCAGCGCATGCAGCTGAGTGGGCAATGGCAGAAATGATCAATAAACCCGAGATTATGCAGAAGGCCGTGGAAGAAATCGATAGAGTGGTTGCAAAGGATAGACTTGTTCAAGAATCCGATATCGCGCAGCTCAAATATGTTAAAGCCTGTGCTAGGGAAGCTCTGCGGCTTCACCCCATGGCACCATTCAACGTGCCCCATGTGTCCATGGCGGACGCTGTTGTGGCCGGCTACTTCATCCCCAAAGGCAGCCATGTCCTGCTGAGCCGGGTAGGGCTTGGACGGAACCCTAGAGTGTGGGAAGAGCCATTAAAGTTTAAACCAGAGCGGCATATGAATGATGAAGTGGTGGATTTAGCTGAGCCTGAGCTTCGGTTCATTTCATTTAGTACTGGGAGACGCGGGTGTCCTGGAACTGCCTTAGGGACAGCGTTGACAGTTACACTCTTGGCGAGACTCCTTCAATGTTTTTCGTGGAGTGTGCCACCGAACCAGGACCAAATTGACCTCACAGAATCAATGAACGAGCTCTTTCTAGCCAAGCCTCTCCATGCTCATGCAAAACCACGCTTGCCTGCTTCCATGTATGGGAATTGA 1347 0.4759 MPLLPPGPTPWPLVGNLPELFTKKPVFRWILGLLEELNTEIACIKLGNVHVIPVISPEIAREILKEHDAVFASRPITMASHHLSRGFLTTALSPWGEHHNFTDSSVVNVRNAVRQYTGNVVRKMMFSRRYFGEGRKDGGPGLEEEEHVNSLFTTLVYLYVFSPSDYLPCLRVFDLDGHEKMVKEALSIINKHHDPIVDERIIQWRNGEKKEVEDILDVFITISDTKGKPLLSVEEIKAQLIELMIEIVDNPAHAAEWAMAEMINKPEIMQKAVEEIDRVVAKDRLVQESDIAQLKYVKACAREALRLHPMAPFNVPHVSMADAVVAGYFIPKGSHVLLSRVGLGRNPRVWEEPLKFKPERHMNDEVVDLAEPELRFISFSTGRRGCPGTALGTALTVTLLARLLQCFSWSVPPNQDQIDLTESMNELFLAKPLHAHAKPRLPASMYGN* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0178 448 PRINTS P450 superfamily signature 299 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS P450 superfamily signature 264 277 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS P450 superfamily signature 377 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 SUPERFAMILY Cytochrome P450 5 440 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS E-class P450 group I signature 255 281 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS E-class P450 group I signature 376 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS E-class P450 group I signature 59 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS E-class P450 group I signature 386 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS E-class P450 group I signature 298 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 PRINTS E-class P450 group I signature 339 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 Pfam Cytochrome P450 104 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 Pfam Cytochrome P450 5 101 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0178 448 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 379 388 IPR017972 GO:0005506|GO:0016705
Vvi13g0178 448 PANTHER CYTOCHROME P450 98A9 4 99 - -
Vvi13g0178 448 Gene3D Cytochrome P450 2 444 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0178 Vvi-Chr13 1519993 1521580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0178 4 446 Cytochrome P450 AT5G05260 57.377 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0178 K12153 - vvi:100241541 856.284