Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0174 ATGTTCACAAACGTTGTCCAACTTTACATTACGCATTTGATTTTGAAAGAGAAGAGAACTGAAGAAGCCGACAATCTTGTCCGCTTCATTTATAACCAGTGTAAATCCTCTACTAGTACTGATAATTTCATGGATTCATCAGTTGTGAATGTGAGAAATGCAATCAGCAAGAGACGAATGATGATGGGTAGCAGCTGCAACTCAACCATGTCTTCTTCATTTCCAAATCCATTCCTCTTCCTGCATTCTGATAATTCTCAAACCTTGGAGCTTGCTTCACTTCATCTTCATTTACCATTCATCCTCTTGCTCCTTTTCCTTTTCGTTTTCGCTTTTCTCATCCTCTACAAACTCAAACCCAAAACCCTAATCACCAAGCAAATGCCACTGCTCCCTCCTGGTCCAACTCCATGGCCATTAGTTGGGAACCTGCCTGAATTATTCACAAAAAAGCCGGTATTCCGGTGGATACTTGGACTTTTGGAGGAACTCAACACTGAGATTGCATGCATCAAACTGGGCAATGTCCATGTCATTCCCGTGATTTCGCCTGAGATTGCCAGGGAGTTTTTGAAGAAACATGATGCAGTGTTTGCATCCAGACCTATTACAATGGCGTCCCATCACTTGAGCAGAGGGTTCTTGACAACAGCTCTTTCTCCATGGGGAGAGCAGTGGAAGAAGATGAGAAGGATCATCATTTCTGAGGTGCTTAAGCCAGCAAGACATATGTGGCTTCTCCAGAAGAGAACTGAAGAAGCCGACAATCTTGTCCGCTTCATTTATAACCAGTGTAAATCCTCTACTAGTACTGATAATTTCATGGACTCATCAGTTGTGAATGTGAGAAATGCAGTCAGACAATACACGGGAAATATCGTTAGGAAGATGATGTTCAGCAGAAGGTACTTCGGAGAAGGAAGGAAAGATGGAGGGCCTGGACTTGAAGAAGAAGAACACGTCAACTCCCTCTTTACTTCGCTTGCTTACCTATATGCATTCTCTCCATCTGATTACCTTCCATGCCTGAGAGTCTTCGACTTAGATGGCCATGAGAAGATGGTAAAAGAGGCTTTAAGCATCATCAGCAAGCATCATGATCCGATAGTGGATGACAGAATAATACAATGGAGGAATGGGGAGAAGAAGGAGGTTGAGGACATACTCGATGTTTTCATTACAATCAGCGACACAAAGGGAAAACCATTGCTATCAGTAGAAGAGATCAAAGCCCAACTCATAGAACTGATGATTGAAATAGTGGATAATCCAGCGCATGCAGCTGAGTGGGCAATGGCAGAAATGATCAATCAACCCGAGATTATGCAGAAGGCCGTGGAAGAAATCGATAGAGTGGTTGGAAAGGATAGACTTGTTCAAGAATCCGATATCGCGCAGCTCAAATATGTTAAAGCCTGTGCTAGGGAAGCTCTGCGACTTCACCCCATAGCACCATTCAACGTGCCCCATGTGTCCATGGCGGACGCTGTTGTGGCCGGCTACTTCATCCCCAAAGGCAGCCATGTCCTGCTGAGCCGGGTAGGGCTTGGACGGAACCCTAGAGTGTGGGAAGAGCCATTGAAGTTTAAACCAGAGCGGCATATGAATGATGAAGTGGTGGATTTAGCTGAGTCTGAGCTTCGGTTCATTTCATTTAGTACTGGGAGACGCGGGTGTCCTGGAACTGCCTTAGGGACAGCCTTGACAGTTACACTCTTGGCGAGACTCCTTCAATGTTTTTCGTGGAGTGTGCCACCGAACCAGAACCAAATTGACCTCAAAGAATCCATGAACGAGCTCTTTCTAGCCAAGCCTCTCCATGCTCATGCAAAACCACGCTTTCATGCTTCCATGTATGGGAATTGA 1866 0.4502 MFTNVVQLYITHLILKEKRTEEADNLVRFIYNQCKSSTSTDNFMDSSVVNVRNAISKRRMMMGSSCNSTMSSSFPNPFLFLHSDNSQTLELASLHLHLPFILLLLFLFVFAFLILYKLKPKTLITKQMPLLPPGPTPWPLVGNLPELFTKKPVFRWILGLLEELNTEIACIKLGNVHVIPVISPEIAREFLKKHDAVFASRPITMASHHLSRGFLTTALSPWGEQWKKMRRIIISEVLKPARHMWLLQKRTEEADNLVRFIYNQCKSSTSTDNFMDSSVVNVRNAVRQYTGNIVRKMMFSRRYFGEGRKDGGPGLEEEEHVNSLFTSLAYLYAFSPSDYLPCLRVFDLDGHEKMVKEALSIISKHHDPIVDDRIIQWRNGEKKEVEDILDVFITISDTKGKPLLSVEEIKAQLIELMIEIVDNPAHAAEWAMAEMINQPEIMQKAVEEIDRVVGKDRLVQESDIAQLKYVKACAREALRLHPIAPFNVPHVSMADAVVAGYFIPKGSHVLLSRVGLGRNPRVWEEPLKFKPERHMNDEVVDLAESELRFISFSTGRRGCPGTALGTALTVTLLARLLQCFSWSVPPNQNQIDLKESMNELFLAKPLHAHAKPRFHASMYGN* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0174 621 PANTHER CYTOCHROME P450 98A9 106 619 - -
Vvi13g0174 621 PRINTS E-class P450 group I signature 512 536 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS E-class P450 group I signature 559 582 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS E-class P450 group I signature 428 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS E-class P450 group I signature 186 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS E-class P450 group I signature 471 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS E-class P450 group I signature 549 559 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS E-class P450 group I signature 289 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 FunFam Cytochrome P450 9 124 617 - -
Vvi13g0174 621 Pfam Cytochrome P450 132 605 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 Gene3D Cytochrome P450 124 618 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 SUPERFAMILY Cytochrome P450 132 613 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 552 561 IPR017972 GO:0005506|GO:0016705
Vvi13g0174 621 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS P450 superfamily signature 550 559 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0174 621 PRINTS P450 superfamily signature 437 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0174 Vvi-Chr13 1456751 1467068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0174 99 619 Cytochrome P450 AT5G05260 59.393 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0174 K12153 - vvi:100265709 1066.22