Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0172 ATGACGTTCAAGCGCAGAAACGGCGGCCGCAACAAGCACGGCCGTGGACATGTCAAGTTCATCCGCTGCTCAAACTGCGGAAAATGCTGCCCAAAGGACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACACTTATACTCTTCCCAAGCTGTATGCAAAGATGCAGTACTGTGTGTCTTGTGCAATTCACTCCCATGTTGTGAGGGTTCGTTCTCGCACTGATAGGAGGAAGCGTGACCCACCACAGCGCTTCAGACGCCGGGATGATATGCCAAAGCCTGGTCAAGCCCCTCGTCCTGCTGGAGGAGCTCCTGTTCGCACCTGA 375 0.5413 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFRRRDDMPKPGQAPRPAGGAPVRT* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0172 124 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vvi13g0172 124 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vvi13g0172 124 MobiDBLite consensus disorder prediction 86 124 - -
Vvi13g0172 124 FunFam 40S ribosomal protein S26 1 113 - -
Vvi13g0172 124 PANTHER 40S RIBOSOMAL PROTEIN S26 1 121 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vvi13g0172 124 MobiDBLite consensus disorder prediction 90 110 - -
Vvi13g0172 124 Gene3D Ribosomal protein S26e 1 115 IPR038551 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0172 Vvi-Chr13 1450276 1452054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0172 1 112 Cytoplasmic Ribosomal Protein Gene Family AT2G40510 84.956 3.93e-66 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0172 K02976 - vvi:100265511 199.904