Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0162 ATGCATATTGGGTCTCAAAACCTCAATCTAGCCCATTCATCTCCAGGCCCAGATCTTAAGGCCAAGGCACCATCCACCAATCAACCAAGTTCTCTCTACCTAAGCAAATCTAAGAGGAGAAAAAAGAGGAAGAAACCAGAGAAAATGGGAGCTATTGGCAACAGCTGTTTTCATTTGGCCTTCAAAAACCCAATTGAAAATGGCGTGGTATTGATGAAGAACAAATCTTCATGTAAGCTCATGGTTCCAAGCAACTCATTCAAAGTGAAGAGGATTTCTTGCAAACTGTCTGAAAGTGGGGTTGAAGAAAGCGCCACTAGCAATAGGGTCTCAAACTCCAATAACAGGATGGAAGACTACAATACAGTCATGAAGGGGATGATGAGGAATCCATATGAGTATCACCATGATCTTGGCATGAATTACACATTGATCACTGATCATTTGATTGTGGGCTCCCAGCCTCAGAAACCTGAAGATGTGGATCATCTGAAACAAGAAGAGAATGTGGCCTACATCCTAAATCTGCAGCAGGACAAGGATGTTGAGTATTGGGAGGTTGACTTACCATCTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTTCGTCGTTGGAATGGGCCATCTCAGAGGGAAAAGGAAAGGTATATGTACATTGTACAGCCGGATTGGGGAGGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTAAACAAGCAATACGTGGAGCTACTTACGATCTAGCTAAAAATGACCCATGGAAGGAACCTTTAGAGAGTCTCCCAGAACGTGCTTTTGAAGATGTTGCAGATTGGGAGAGGAACTTGATTCAAGACCGGGTCCGTTCCCTGCGTGGAACTTGA 996 0.4378 MHIGSQNLNLAHSSPGPDLKAKAPSTNQPSSLYLSKSKRRKKRKKPEKMGAIGNSCFHLAFKNPIENGVVLMKNKSSCKLMVPSNSFKVKRISCKLSESGVEESATSNRVSNSNNRMEDYNTVMKGMMRNPYEYHHDLGMNYTLITDHLIVGSQPQKPEDVDHLKQEENVAYILNLQQDKDVEYWEVDLPSIIKRCKELEIRHMRRPARDFDPDSLRSGLPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMDLNTAYDTLTSKRPCGPSKQAIRGATYDLAKNDPWKEPLESLPERAFEDVADWERNLIQDRVRSLRGT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0162 331 MobiDBLite consensus disorder prediction 1 49 - -
Vvi13g0162 331 ProSiteProfiles Dual specificity protein phosphatase domain profile. 141 298 IPR020422 GO:0006470|GO:0008138
Vvi13g0162 331 SMART dsp_5 141 283 IPR020422 GO:0006470|GO:0008138
Vvi13g0162 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 218 277 IPR000387 GO:0016311|GO:0016791
Vvi13g0162 331 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 84 300 - -
Vvi13g0162 331 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 124 331 - -
Vvi13g0162 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 138 280 IPR029021 -
Vvi13g0162 331 CDD DSP_laforin-like 140 287 IPR045204 GO:0019203
Vvi13g0162 331 MobiDBLite consensus disorder prediction 20 34 - -
Vvi13g0162 331 Gene3D Protein tyrosine phosphatase superfamily 125 331 IPR029021 -
Vvi13g0162 331 Pfam Dual specificity phosphatase, catalytic domain 162 278 IPR000340 GO:0008138|GO:0016311
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0162 49 331 Protein tyrosine phosphatase (PTP) family AT3G10940 70.242 8.92e-147 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0162 - - vvi:100251903 585.104