LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0160	ATGGAAAATAAGGGGAATGTGCTGATGCAAAGGTATGATGTCGGGAGATTGCTAGGCCAAGGAAACTTTGCTAAGGTTTACTATGGAAGGGATCTAAAAACTGGCCAGAGTGTAGCCATTAAGGTGATCGACAAAGAAAAGATTTTTAAAGTGGGGCTAATTGATCAGACCAAGAGGGAGATATCTGTTATGAAGCTTGTAAAACACCCTAATGTCATTCAGTTTTACGAGGTCATGGCCACCAAAACCAAGATTTACTTTGTTATGGAATATGCCAAAGGTGGTGAGCTGTTTAACAAGGTAGCCAAAGGAAGGCTCATGGAGGATTTTGCAAGGAATTATTTTCAACAGTTGATCAGTGCCGTTGACTTTTGCCACAGCAGAGGTGTTTATCACCGGGATTTGAAACCAGAAAACCTATTGCTGGACGAGAATGGAGTTCTGAAGGTGACAGATTTTGGGTTGAGTGCCCTTGCAGAATCGAAGCATCAAGATGGATTACTCCACACAACTTGTGGAACCCCTGCTTATGTAGCGCCAGAAGTGATAAATAGAAAAGGGTATGATGGGGCCAAAGCTGACATCTGGTCTTGTGGGGTGATCTTATTTGTTCTTCTGGCTGGGTATCTCCCATTCCATGATTCAAATCTAATGGAGATGTATAGGAAGATAGGCAAGGCAGATTATAAATGCCCCAATTGGTTCCCATCTGAAGTGCGCAGGTTGCTGTCAAAAATCCTTGACCCAAACCCTAATACTAGGATTTCCATTGCAAAAATAATGGTAAATCCCTGGTTTAGGAGAGGGTTCATCCCCAAGCCTTTGAAAACTAAAACAGAAGTCAAGGATTTAGATCCACTGGGCACAGATACAGTTTTTGGCCCTTGTGAGAATAACAGTGCTGCTGCCGGAGAGATGAAAGAGTTGTCGAAACCTACCCAGCCTACCAATTTGAATGCATTTGATATCATCTCTCTTTCTACGGGGTTTGACTTGTCTGGTTTGTTTGCAACCAATGACCAAAAGAAAGAAGTACAATTTACATCCAGGCAGCCCGCCACAGCTATCATATCTAAACTGGAGGAGATTGCTAGGCGCCTAAGACTGAAAATTAAAAAGAAGGATGGAGGATTGTTGAAATTGGAGGGATCAGTGGAAGGTAGAAAGGGGCCATTGTCCATTGATGCTGAAATATTTGAGTTTACTTCGTCTTTTCATTTGGTGGAAATGAAGAAGTCCAGTGGTGATACTTTGGAATATCAGAAGATACTGAGACAGGAGATAAGGCCAGCACTCAAGGACATTGTTTGGGCTTGGCAAGGTGAGCAGCAACAGCAGCAGCAACAACAACAACAACAAGAACCATATCAAGAACTGCAGGTTCATTCTTCTTGA	1395	0.4265	MENKGNVLMQRYDVGRLLGQGNFAKVYYGRDLKTGQSVAIKVIDKEKIFKVGLIDQTKREISVMKLVKHPNVIQFYEVMATKTKIYFVMEYAKGGELFNKVAKGRLMEDFARNYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGVLKVTDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVILFVLLAGYLPFHDSNLMEMYRKIGKADYKCPNWFPSEVRRLLSKILDPNPNTRISIAKIMVNPWFRRGFIPKPLKTKTEVKDLDPLGTDTVFGPCENNSAAAGEMKELSKPTQPTNLNAFDIISLSTGFDLSGLFATNDQKKEVQFTSRQPATAIISKLEEIARRLRLKIKKKDGGLLKLEGSVEGRKGPLSIDAEIFEFTSSFHLVEMKKSSGDTLEYQKILRQEIRPALKDIVWAWQGEQQQQQQQQQQQEPYQELQVHSS*	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g0160	464	Gene3D	Kinase associated domain 1, KA1	313	438	-	-
	Vvi13g0160	464	SUPERFAMILY	Protein kinase-like (PK-like)	8	280	IPR011009	-
	Vvi13g0160	464	Gene3D	Phosphorylase Kinase; domain 1	2	91	-	-
	Vvi13g0160	464	CDD	STKc_SnRK3	11	265	-	-
	Vvi13g0160	464	ProSiteProfiles	NAF domain profile.	313	337	IPR018451	GO:0007165
	Vvi13g0160	464	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	433	-	-
	Vvi13g0160	464	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0160	464	ProSitePatterns	Protein kinases ATP-binding region signature.	18	41	IPR017441	GO:0005524
	Vvi13g0160	464	Gene3D	Transferase(Phosphotransferase) domain 1	92	270	-	-
	Vvi13g0160	464	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0160	464	CDD	CIPK_C	319	433	-	-
	Vvi13g0160	464	Pfam	NAF domain	315	373	IPR004041	GO:0007165
	Vvi13g0160	464	FunFam	Non-specific serine/threonine protein kinase	3	91	-	-
	Vvi13g0160	464	FunFam	Non-specific serine/threonine protein kinase	313	437	-	-
	Vvi13g0160	464	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0160	464	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
	Vvi13g0160	464	MobiDBLite	consensus disorder prediction	444	464	-	-
	Vvi13g0160	464	FunFam	Non-specific serine/threonine protein kinase	2	289	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0160	Vvi-Chr13	1345932	1347326	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0160	1	445	CBL-interacting serine-threonine protein kinases	AT5G58380	67.621	0.0	637

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vvi13g0160		Pkinase	4.8e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0160	K07198		-	vvi:100241678	891.338