Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0154 ATGTCAAGAGAAAGGGAGAGATTTGATGAGATAGGCAAGAAGATCAAGAGAGAAACCGATGCCTTTACTCAGATGGGAAGAAGACACATGTTGGGGCCTCCCGGAACCCTAAACTCCATCACCCCTTGCGCTGCTTGTAAGCTCTTGAGAAGGAGGTGTGCCCAAGAATGCCCCTTTTCTCCCTACTTCTCTCCCCATGAACCCCAGAAGTTTGCTTCCGTTCACAAAGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTCATGGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTTCAGCTTTACAACAGCAAGTCCAATCTCTACAAGCTGAACTCAATGCAGTAAGGGCTGAGATACTAAAGTACAAATATAGAGAAGCCAATATCATTCCACCTTCCCATATAGCTTTGCTTTCTTCCGGGGCTGTTTCAGTAGCTGCACCACCACCAGCACAGCCACCAGCACAGGCCCCACCGCCGCCGCCTCCACCTCCTCCTATTCCTCTTCCTCTTCCTCCTAACTCCTCTTCCTCCATGTACACCCAACCGTCGAGCTCCGCCGACTATAGCACCATCTCAAGTGAAAATGTCTCCTACTTCGGTTAA 675 0.5081 MSRERERFDEIGKKIKRETDAFTQMGRRHMLGPPGTLNSITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKYREANIIPPSHIALLSSGAVSVAAPPPAQPPAQAPPPPPPPPPIPLPLPPNSSSSMYTQPSSSADYSTISSENVSYFG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0154 224 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vvi13g0154 224 MobiDBLite consensus disorder prediction 197 224 - -
Vvi13g0154 224 MobiDBLite consensus disorder prediction 169 224 - -
Vvi13g0154 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 193 - -
Vvi13g0154 224 MobiDBLite consensus disorder prediction 170 196 - -
Vvi13g0154 224 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Vvi13g0154 224 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0154 Vvi-Chr13 1310149 1311165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0154 1 153 AS2 family AT2G30340 68.712 2.37e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0154 LOB 5.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0154 - - vvi:100251929 377.481