Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0153 ATGGCTTCCCCCTCTTCTTACATGGCCATTGTGACTATGGCTCTCCTAATTCTCTTCTTGGGCAGCTCCACTGCTCAACTTTCAACCGATTACTACTCCCAATCCTGTCCAAAGCTCTTCCCCACTGTGAAGTCTGCAGTGAAGTCTGCAGTAGCAAAAGAAGCCCGGATGGGAGCCTCGCTCCTACGCCTTTTCTTCCATGATTGCTTTGTTAATGGATGTGATGGCTCGGTACTTCTAGACGACACATCCTCCTTCATAGGAGAGAAGAATGCAGCTCCAAATGCAAATTCCGTAAGGGGATTCGATGTGGTTGATGATATAAAATCCAAAGTTGAGACGGCCTGCCCAGGTGTGGTCTCGTGTGCTGATGTTCTGGCCATTGCTGCTAGAGACTCTGTAGTCATTCTTGGAGGGCCTAGCTGGAACGTAAAACTTGGGCGAAGAGACGCCCGGACCGCAAGCCAGGCTGCTGCAAACAACAGCATCCCTCCTCCAACTTCAAACCTGAACCAACTAATCTCTAGATTCCAAGCTCTTGGCCTCTCAACCAGGGACTTGGTTGCCTTAGCTGGCTCACACACAATTGGGCAAGCAAGGTGCACATCCTTCAGGGCCCGCATATACAATGAGACAAACATCGATAATTCCTTCGCTAAAACAAGGCAGAGCAACTGCCCAAGAGCCAGTGGCTCAGGGGACAACAACTTGGCCCCTCTGGATCTTCAAACTCCTACAGCTTTTGAGAACAACTACTACAAGAACCTGATCAAGAAGAAAGGGCTTCTCCACTCTGATCAGCAGCTGTTCAATGGGGGTTCCACTGATTCTATAGTGAGAAAGTACAGCAACAGCCGGAGCAACTTCAATGCTCATTTTGTAGCAGGGATGATCAAGATGGGAGATATCAGCCCACTCACTGGATCAAATGGAGAGATTAGGAAGAACTGCAGAAGGGTGAATTGA 966 0.4896 MASPSSYMAIVTMALLILFLGSSTAQLSTDYYSQSCPKLFPTVKSAVKSAVAKEARMGASLLRLFFHDCFVNGCDGSVLLDDTSSFIGEKNAAPNANSVRGFDVVDDIKSKVETACPGVVSCADVLAIAARDSVVILGGPSWNVKLGRRDARTASQAAANNSIPPPTSNLNQLISRFQALGLSTRDLVALAGSHTIGQARCTSFRARIYNETNIDNSFAKTRQSNCPRASGSGDNNLAPLDLQTPTAFENNYYKNLIKKKGLLHSDQQLFNGGSTDSIVRKYSNSRSNFNAHFVAGMIKMGDISPLTGSNGEIRKNCRRVN* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0153 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vvi13g0153 321 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 Pfam Peroxidase 43 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 FunFam Peroxidase 164 300 - -
Vvi13g0153 321 Gene3D Peroxidase, domain 2 164 300 - -
Vvi13g0153 321 ProSiteProfiles Plant heme peroxidase family profile. 26 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 CDD secretory_peroxidase 26 320 IPR033905 GO:0004601|GO:0042744
Vvi13g0153 321 PANTHER PEROXIDASE 72-RELATED 24 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 SUPERFAMILY Heme-dependent peroxidases 26 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi13g0153 321 Gene3D - 30 321 - -
Vvi13g0153 321 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vvi13g0153 321 FunFam Peroxidase 30 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0153 Vvi-Chr13 1304531 1306021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0153 25 321 Peroxidase AT5G05340 76.431 1.43e-173 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0153 K00430 - vvi:100257059 624.78