Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0149 ATGAAAGAGATAGAAGAGGAGCTTAACGAGAAATTGAGCTTTCTTGGAGGATTTGCTGCTGCTTTCAGAGACCAAATTCACACTGATATTGAAGTCAAGCCAGGCCACAATGGACCTTCTCTATTTGCACATAGAGCATTATTGGCAGCAAGGTCAGAGATCTTCAAGAACATGCTGGACTCAGATGGATGCAAAGCTGCACCAAGTAACACCATAACACTCCCGGAATTGAACCATGAAGAGCTTGACTCTCTCCTTGAGTTCCTCTACAGTGGAAGCCTGCCTGCAGACAAGGTGGAGAAGCATGTCTACTCATTATCACTGGCCGCAGACAAGTATGAAATCCCATTCTTGCAGAAGTTCTGCGAGCAGCGAATGCTAGGATCCTTGAGCTCATCCAGCGCTCTCGATGTTCTAGAGATATCCGACGCATGTTCTAGCCAGACAGTGAAGGAGACAGCCTTGAATTACATCGTTAAAAACATGGAGGACATAGTTTTTTCAACTAGGTATGAATCATTTGCCCTCAAGAACCCACATCTGTGTGTACAGATCACAAGGGCATCGTTCATGGATGCTAAAAACCGAAAAAATGGGGTTTGA 603 0.4494 MKEIEEELNEKLSFLGGFAAAFRDQIHTDIEVKPGHNGPSLFAHRALLAARSEIFKNMLDSDGCKAAPSNTITLPELNHEELDSLLEFLYSGSLPADKVEKHVYSLSLAADKYEIPFLQKFCEQRMLGSLSSSSALDVLEISDACSSQTVKETALNYIVKNMEDIVFSTRYESFALKNPHLCVQITRASFMDAKNRKNGV* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0149 200 CDD BTB_POZ_ZBTB_KLHL-like 27 113 - -
Vvi13g0149 200 Gene3D Potassium Channel Kv1.1; Chain A 2 129 IPR011333 -
Vvi13g0149 200 ProSiteProfiles BTB domain profile. 28 98 IPR000210 GO:0005515
Vvi13g0149 200 SMART BTB_4 28 130 IPR000210 GO:0005515
Vvi13g0149 200 Gene3D - 130 198 - -
Vvi13g0149 200 SUPERFAMILY POZ domain 13 129 IPR011333 -
Vvi13g0149 200 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 1 197 IPR044784 -
Vvi13g0149 200 Pfam BTB/POZ domain 26 127 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0149 Vvi-Chr13 1280451 1281232 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi13g0149 BTB 8.8e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0149 K10523 - vvi:100255303 395.971