Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0148 ATGGTTTCTAGGGAGCACAAGAGACCAGCAACACCCCTGCATGAGAAGTTTCAACTCCTTCGTTCCATTACTAACTCTCATGCACTGAACAAGACCTCCATCATCGTTGATGCATCAAAGTATATAGAAGAGCTGAAACAAAAGGTGGAAAGGCTGAATCGAAATATAGCAAGTACTGCACAAAATTCAGCTGCCCAAACTCTCTTGCCTGTGCAGGTTACAGTAGAAACCCTAGAAAAGGGTTTCCTAGTAAATGTGTTTTCCGAGACGAGTTGCCCTGGTCTGCTCGTCTCGATATTGGAAGCCTTCGAGGAGCTTGGTCTTAATGTACATGACGCTAGTGTTTCTTGTACCGATCGGTTTCAATTAGAAGCAGTTGGAGGAGAAGATGAAGAACAAGTAGAAAGCATCGATGCCCAGGTGGTGAAACAAGCAGTTATGCAGGCGATCAAGAACTGGAGTGAAAGTATTAGCCAATGA 480 0.4437 MVSREHKRPATPLHEKFQLLRSITNSHALNKTSIIVDASKYIEELKQKVERLNRNIASTAQNSAAQTLLPVQVTVETLEKGFLVNVFSETSCPGLLVSILEAFEELGLNVHDASVSCTDRFQLEAVGGEDEEQVESIDAQVVKQAVMQAIKNWSESISQ* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0148 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 61 IPR036638 GO:0046983
Vvi13g0148 159 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 156 - -
Vvi13g0148 159 Coils Coil 35 62 - -
Vvi13g0148 159 CDD ACT_UUR-ACR-like 93 150 - -
Vvi13g0148 159 ProSiteProfiles ACT domain profile. 84 156 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0148 Vvi-Chr13 1277690 1278682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0148 13 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 31.081 2.29e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0148 - - vvi:100245026 300.056