Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0129 ATGGTTATGGATAAGGAAACGGAGATTTTCAAAGGCTTTTACGCATACCCTTTTTGGGTTTTTCAGTTTTTCAGTGGGAGAGTGGTGGGTTGGAGACACATTTGTGATAAAAAGAAGGAGAAATGGAAAAAATTTCAGCTCAAGAGTGAGGCTTCTGGGCATTATGCTCGCTTTCTACTGTTTGTTCAGTTGATTATCTTGGTGGTCCAGCCTGTTTCAAGCCAGGCATGGGATGGAGTCATTGTCACAGAAGCTGATTTCCAATCGCTTCAGGCCTTCAAGCATGAACTGGTGGATCCAAGAGGGTTCTTGAGGAGCTGGAACGACAGTGGATATGGAGCTTGTTCGGGTGGTTGGGTTGGGATCAAGTGTGCTCAGGGACAGGTCATTGTTATTCAGCTTCCATGGAAAGGATTGGGAGGTCGAATCTCAGAGAAGATTGGGCAGCTACAAGCGCTACGAAAACTGAGTCTCCATGATAATTTCATTGGTGGTTCCATACCTTCAGCTCTGGGGTTTCTCCCAAACCTCAGAGGAGTTCAGCTCTTCAATAATAGGTTTTCGGGTTCTATTCCTCCTTCAATTGGCTCCTGTCCCTTGCTTCAAACTGTTGATCTCAGTAACAATTCTCTCTCTGGGACTATCCCTGATAGTCTTTTCAACTCTACCAAGTTTTACAGGCTCAATCTCAGCTTCAATTCCTTTTCGGGTTCCATCCCTGTTAGTCTCACTCGCTCTTCTTCCCTCACCTTCCTTGCTCTCCAACACAATAACCTCTCTGGCCCTATACCCAACTCTTGGGGTGTTGGGACGCAAGGGAAAAGCCTTTTTCGCCTTCAGTCATTAGCCCTTGATCATAACTTCTTCTCTGGAAGCATGCCCACTTCTTTGGGGAAGTTGAGTGAGCTCCAAAAGGTTTCTCTCAGTCATAACCAGATCACTGGAGCCATACCTGATGAAATAGGTCGGCTCTCCAGGCTTAAAACAGTAGATTTCTCCAGCAATGCCATTAATGGAAGCTTGCCCATTAGTCTCTCCAATTTATCCTCTCTTCTTGTGTTGAATCTGGAGAACAATGGCCTTGATAGCCAAATCCCAGATGCCTTTGAGAAGTTGCAGAACCTTTCAGTCCTCAACTTGAGGAGAAACCGATTCAATGGTCCTATTCCTGGAAGTATCGGGAACGCTTCAGCGCTCACACAGCTTGATTTATCGCAGAATAACCTTACCGGAGATATCCCATCTTCCATTGCTGATCTTCCAAACCTGAATTCCTTCAATGTTTCTTACAACAACCTCTCTGGTTCTGTTCCAGCTCTTCTGTCCCAAAAGTTCAATTCAAGCTGCTTTGTGGGGAATCTTCAGCTCTGTGGGTACGATGCTTCAACCCCTTGCCCTTCTGAAGTACCTTCTCAAGTTGTCCCAGCTCCATCTCGGGGAAAACCGAGGAGCCATGGCAGAAAACTAAGTACCAAGGACATAATTCTCATAGCAGCAGGGGCACTGCTCATAATCTTGCTTCTAGTCTGCTGTATTTTGCTGTGCTGCTTGATCAGAAAAAGGGCTGCATCAAAAGCAAAGGATGGTCAGGCCACAGGAAGAAGGCCTGGAGCAGCAAGGGCCGAGAAGGGCGCCCCATCAGCCGGCGTTGAAGTCGAAGCAGGCGGAGAGGCAGGAGGCAAACTAGTCCATTTTGATGGGCCAATGGTGTTCACAGCCGACGATCTTTTGTGTGCAACCGCAGAGATTATGGGAAAGAGCACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAACGAAGTTGCAGTGAAGAGATTGAGGGAGAAGATCACAAAAAGCCAGAGGGAATTCGAAACTGAGGTTAATGTACTTGGGAAAATTCGACACCCTAATCTTCTGGCTCTCAGGGCTTACTACTTAGGACCCAAAGGGGAGAAACTTCTTGTTTTCGACTACATGCCGAAAGGGAGCCTCGCAGCTTTCCTCCATGCCCGCGGCCCGGACATATCGATTGATTGGCCAACAAGGATGAGAATCGCACAAGGAACTACGCGCGGTCTGTTCCACCTTCATAACAATGAAAACATAATCCATGGGAACCTTACATCAAGCAATTTATTACTAGATGAGAATATAACTGCCAAGATTGCAGACTTTGGCCTCTCCAGGTTAATGACGACTGCAGCCAATTCTAATGTGATTGCAACAGCAGGGGCATTGGGTTACCGGGCACCGGAGCTCTCGAAGCTGAAGAAAGCCAGCACAAAGACTGATGTATACAGTCTCGGGGTTATTATCCTGGAGCTTCTAACAGGGAAGTCGCCAGGGGAGGCGACGAATGGAGTGGATTTGCCTCAGTGGGTGGCCTCCATTGTGAAGGAGGAGTGGACAAATGAAGTGTTCGATTTGGAGTTGATGAAGGATGCGTCTACGATTGGTGATGAGTTGCTGAACACTTTGAAACTGGCTTTGCATTGTGTGGATCCTTCACCCTCAGCACGGCCGGAAGTCCACCAGGTTCTCCAGCAGCTTGAGGAGATCAGACCGGAGGCAGCTGCTAGTTCCGGTGAGGATGGAGCCGGAGTCCCTTCAGCAAGTGATTGA 2610 0.4778 MVMDKETEIFKGFYAYPFWVFQFFSGRVVGWRHICDKKKEKWKKFQLKSEASGHYARFLLFVQLIILVVQPVSSQAWDGVIVTEADFQSLQAFKHELVDPRGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLGGRISEKIGQLQALRKLSLHDNFIGGSIPSALGFLPNLRGVQLFNNRFSGSIPPSIGSCPLLQTVDLSNNSLSGTIPDSLFNSTKFYRLNLSFNSFSGSIPVSLTRSSSLTFLALQHNNLSGPIPNSWGVGTQGKSLFRLQSLALDHNFFSGSMPTSLGKLSELQKVSLSHNQITGAIPDEIGRLSRLKTVDFSSNAINGSLPISLSNLSSLLVLNLENNGLDSQIPDAFEKLQNLSVLNLRRNRFNGPIPGSIGNASALTQLDLSQNNLTGDIPSSIADLPNLNSFNVSYNNLSGSVPALLSQKFNSSCFVGNLQLCGYDASTPCPSEVPSQVVPAPSRGKPRSHGRKLSTKDIILIAAGALLIILLLVCCILLCCLIRKRAASKAKDGQATGRRPGAARAEKGAPSAGVEVEAGGEAGGKLVHFDGPMVFTADDLLCATAEIMGKSTYGTVYKATLEDGNEVAVKRLREKITKSQREFETEVNVLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLAAFLHARGPDISIDWPTRMRIAQGTTRGLFHLHNNENIIHGNLTSSNLLLDENITAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKASTKTDVYSLGVIILELLTGKSPGEATNGVDLPQWVASIVKEEWTNEVFDLELMKDASTIGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPEAAASSGEDGAGVPSASD* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0129 869 Pfam Protein tyrosine and serine/threonine kinase 581 846 IPR001245 GO:0004672|GO:0006468
Vvi13g0129 869 SUPERFAMILY Protein kinase-like (PK-like) 582 850 IPR011009 -
Vvi13g0129 869 FunFam Leucine-rich repeat receptor-like protein kinase 563 654 - -
Vvi13g0129 869 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 278 849 - -
Vvi13g0129 869 SMART LRR_typ_2 348 371 IPR003591 -
Vvi13g0129 869 SMART LRR_typ_2 198 222 IPR003591 -
Vvi13g0129 869 SMART LRR_typ_2 372 396 IPR003591 -
Vvi13g0129 869 SMART LRR_typ_2 150 174 IPR003591 -
Vvi13g0129 869 SMART LRR_typ_2 420 443 IPR003591 -
Vvi13g0129 869 SMART LRR_typ_2 276 299 IPR003591 -
Vvi13g0129 869 SMART LRR_typ_2 300 324 IPR003591 -
Vvi13g0129 869 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Vvi13g0129 869 FunFam Pollen receptor-like kinase 1 655 859 - -
Vvi13g0129 869 Gene3D Ribonuclease Inhibitor 83 240 IPR032675 -
Vvi13g0129 869 CDD STKc_IRAK 584 849 - -
Vvi13g0129 869 Gene3D Transferase(Phosphotransferase) domain 1 656 862 - -
Vvi13g0129 869 ProSiteProfiles Protein kinase domain profile. 578 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0129 869 Gene3D Ribonuclease Inhibitor 241 339 IPR032675 -
Vvi13g0129 869 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Vvi13g0129 869 Pfam Leucine rich repeat 374 433 IPR001611 GO:0005515
Vvi13g0129 869 SUPERFAMILY L domain-like 123 462 - -
Vvi13g0129 869 Gene3D Ribonuclease Inhibitor 340 467 IPR032675 -
Vvi13g0129 869 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 84 238 - -
Vvi13g0129 869 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 469 - -
Vvi13g0129 869 MobiDBLite consensus disorder prediction 846 869 - -
Vvi13g0129 869 MobiDBLite consensus disorder prediction 527 551 - -
Vvi13g0129 869 Gene3D Phosphorylase Kinase; domain 1 584 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0129 Vvi-Chr13 1138817 1141515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0129 75 851 Receptor kinase-like Gene Family AT3G51740 67.391 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi13g0129 PK_Tyr_Ser-Thr 4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0129 - - vvi:100246700 1613.2