Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0125 ATGCCAGTGAAGAGAAAGTCTCGAAGCCGGCGAAGTGGACCTAATTCCGTGGCCGAGACTCTTGCAAGATGGAAACAATACAACGATATACTTGATTCTGTCCGCAAAGCTCCAGCAAAAGGTTCAAAGAAGGGGTGTATGAAAGGTAAAGGGGGGCCCGAGAATTCAATATGTGGTTACAGGGGTGTGAGGCAGAGGACATGGGGTAAATGGGTTGCTGAGATTCGGGAGCCAAACAGAGGGAGTAGGCTATGGTTAGGTACCTTCCCAACTGCCATTGAAGCTGCTCTTGCATATGACGAAGCTGCAAGGGCCATGTATGGTTCTTCTGCCCGTCTTAATCTTCCAAATTACACCACGTCTTTGAAGGATTCTTCTTCGGCTCCAACTACATCGGTTTCTGATTCCACCACGACAACATCCAACTACTCTGAAGTGTGTGCATATGAGGATTCAAAGAAGCCTGTTTTACCGAGTATCAAACATGAAAGTGGCGAAGGTGAATCAGGAATAAGTGGTGGTATGCTTTCTGCAGTGGTTAAAGCTGAACCTGCCACACCAGTTAGTTTGGTAACACAGGGAGGAGGTAATGATCCTGTCAATGTAGGTAATGAACCTGTTGATGCAATGAAGCTCCAGCATGAAGAAAACGGTCATTCTTTGGATGCCATGTACTTCAAGAATGAAGACGGAGGACAGGATTTCTTGGAAGGATTTCCTATGGATGAAATGTTTGATGTGGATGAATTTTTGAGGGCCATAGACTCTGACCCCCTTGCTAGCTATGGTACAAGGCAGGAATTGGGTCATGATTCTGGGCAAGTAGGGAGCTTTGAAACTGATAATATGCAGTGGGAAAAGCCAACGGATTTATCTTACCAACTGCAAAATCCAGATGCTAAGCTTCTTGGGAGTTTGAATCATATGGAGCAAGTGCCTTCTGACTTTGATTATTGCTATGGCTTCTTGCAGCCAGGCAAGCAGTTAGATCCCTGTATAGGGTTGAATGATCAGGGGTTACTTGATTTGGAATTATCAGATATGGGGTTCTAA 1053 0.452 MPVKRKSRSRRSGPNSVAETLARWKQYNDILDSVRKAPAKGSKKGCMKGKGGPENSICGYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARAMYGSSARLNLPNYTTSLKDSSSAPTTSVSDSTTTTSNYSEVCAYEDSKKPVLPSIKHESGEGESGISGGMLSAVVKAEPATPVSLVTQGGGNDPVNVGNEPVDAMKLQHEENGHSLDAMYFKNEDGGQDFLEGFPMDEMFDVDEFLRAIDSDPLASYGTRQELGHDSGQVGSFETDNMQWEKPTDLSYQLQNPDAKLLGSLNHMEQVPSDFDYCYGFLQPGKQLDPCIGLNDQGLLDLELSDMGF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0125 350 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Vvi13g0125 350 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 2 316 - -
Vvi13g0125 350 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Vvi13g0125 350 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Vvi13g0125 350 CDD AP2 58 117 IPR001471 GO:0003700|GO:0006355
Vvi13g0125 350 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Vvi13g0125 350 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vvi13g0125 350 SUPERFAMILY DNA-binding domain 59 116 IPR016177 GO:0003677
Vvi13g0125 350 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Vvi13g0125 350 MobiDBLite consensus disorder prediction 119 140 - -
Vvi13g0125 350 FunFam Ethylene-responsive transcription factor 2 58 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0125 Vvi-Chr13 1081827 1083101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0125 4 350 AP2-EREBP Transcription Factor Family AT2G40340 41.226 1.06e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi13g0125 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0125 - K09286 vvi:100267216 658.677