Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0124 ATGCGGAAGAGGAATTTATGTCGAAACCAGCATCCATTTCATGCACATCCTTTTGAGGCATTTTACTTTGGGTCATGGCAAGCCATAGAACTCATGAGGATTGAGGATGGAACAGTAGCCCTACATCTGGCAGAGAGTGAGTATGTAATTGAGGAGAAAAGTCCAATCCCAAACCTTCGGATAAGGCCAAGGAAAGCAACTTTGTCTGATTGTACTTGCTTTCTGAGGCCTGGCACAGAAATAACCGTGCTTTGGACCTTGCAACAGTCAGAAAGTTCAGATGAAGAAAATCGAGAGCCGGTGTGGATTGATGCTAAGATAAGTTCCATTGAGAGGAGGCCTCACGAGCCCGAATGTTCATGCCAATTTTTTGTCAACTTCTACATTACCCAAGACCCCCTTGGCACAGAGAAGGGAACACTTAGCAAGGATATCAGTGTTGTAGAACTCGATCAGATTTCTATCCTCCAAAAACTTGGAAAATATCCTTGTGAAGATGAGCACTACCGGTGGAAATTTTCTGAGGACTGCTCTTTGCTGCAAAGAACTAAATTGTTCTTGGGGAAATTCTCATCTGATCTTTCATGGCTTGTTGTTACATCAGTTTTAAAGCAAGCTGTATTTGACGTAAGGTCAGTGCAAAATAGGATTGTCTATCAAATTGTGGGTGGTGATCATGATAAGGTTTCATTAAATGCTGTAAATTTTAGAGTAGACAATGGAATTTCCACTCCTGTCATATTCCCCTTTGTTCCTGCTGATACTATTGAGGCTGATCCTTTAAATGGCACCAATGAAGCTGGACCATTACCATTCTGTGATATTGTGGACTTACGGCGCTCCAAGCGTCGAAATGTACAACCTGATCGTTTCTTTAGCTTAGGTGGCTTTTCAGAGTCGGATATTGGGTCAGTTCGAGCGGGGATACACAAGGTAGACTACTGGAGAAAGGAAGAAATGCCATTGGCATTGCCAGATGAGGGGGACGTGCATTCAATTTTTTCAGAAAAGCATATTATTGATTATGAAAAAGGGGCCCACTCTCTTCAAATAGATTCCTATGAGGATTTCCTTGTCTGCAAAAGCAAGGACAGGTCAAGGGAGGTAAAGCCAATTCTGGCTGCACAAAATGAAGATCAACATCAATTTGCTATTGTTCCTGTGCCTCTCATTATTGAACCAATAGCACATGGAGAAGATCATCTCCATGATGAGACTCCTTGGAATGAGTCAGGAGAGATTGGGGAGATATCTCCCAAGTATTACTGCACAAATGGTGTTCCTAAATTACAGCGTAAGAATATGTCTGATTTATATATGGAGGTCGAGAGCAGATGGGAAGGGAAAGGTCCAATTAGGAAACTCCGAAGAAAAAGGGGTTTTACTATACGTACGAAAACAGAGAGTTATGGTGAAGTAAGACCTCATAAAAAGAGACCCTTCAGTGAACCTGGGTATAAGGAAGTGATAGAAGCTTACATGAAAAACATAGAATCCACAATCAATAAAGAACAGCCACTTGTTATCGACCAATGGAAAGAACTTCAGGTGAGAAATGACTTGAACCAAAGAAGGGACTGCAACTCACCATCTTCGGTTGGGGATCAGGAAGAAAGCTCAGAAACTGAAATGTTGTGGAGAGAAATGGAATTCTCCATTGCATCATCTTATCTTCTAGAAGAAAATGAGGGGTCAAATGTTGAAGTCTTGAAGGAGGTTGTGCAAGAATCAAGTAACATTAGTGAACAAGTTTGCCAGCACGAATACATATTGGACGAAGAAATTGGGGTTCTATGTCAGTTATGTGGCTTTGTGAGCACTGAAATAAAAGATGTCTCACCCCCCTTTTTTCAACCCACTGGTTGGATCACAAACAGAGAATGGCGTGATGAAGAAAATTCAAAGCGTAAGCAGGCTGAAAATGATGGCTTCAATCTTTTCTCCATTCCTGCTTCCTCTGACACACCCTTGTCAGAAGGAAATGACAATGTGTGGGCCTTAGTACCTGATCTGAGAAAGAAATTACGGTTACACCAGAAGAAAGCTTTTGAGTTTCTATGGAAAAATATTGCTGGCTCTATGGTACCAGCACTAATGGAACAAGAAGTCAAGAGAAGAGGTGGTTGTGTTATTTCTCATTCTCCTGGAGCTGGAAAAACTTTTCTTGTTATCTCGTTCCTGGTGAGCTACTTGAAGTTATTTCCCGGAAAACGGCCTTTGGTCCTTGCTCCAAAGACAACACTCTATACCTGGTACAAAGAAATTATTAAGTGGAAGGTTCCTGTTCCAGTTTATCAAATCCACGGTTGTAGAACCTACAGATATGAAATCTACAAACACAAAGTGGAAACTTCTCCAGGGATTCCAAGACCGAACCAAGATGTTATGCATGTTCTTGATTGCCTAGAGAAAATACAGAAGTGGCATGCACATCCAAGTATTCTTCTCATGGGTTATACCTCGTTTCTGTCATTGATGCGAGAAGATTCAAAGTTTATCCATAGGAGATACATGGGTGAAGTTCTGCGGCAAAGTCCAGGAATTCTTGTACTCGATGAAGGGCACAACCCAAGAAGCACAGGATCAAGGTTAAGGAAAGCTCTGATGAAAGTTAAAACAAACCTGAGAATTTTGCTTTCAGGTACATTGTTTCAGAATAATTTCAGTGAATATTTCAACACCCTTTGCTTAGCAAGACCGAAGTTTGTCAATGAGGTGTTAAGGGAATTGGACCCAAAATTTAAGAGGAACAAGAATCGGAGGAAAAGAAGATACAGTTCAACAGAATCTCGGGCAAGAAAATTCTTCACAGATGAGATTGCAAAGCGAATCAATTCAAATGTGCCAGAAGAACAGATAGAGGGCCTAAACATGTTAAGGAATCTCACTAGTAAATTTATAGATGTGTATGAAGGTGGAAGTTCTGACAACCTACCTGGTTTACAAGTTTACACCTTGTTGATGAAATCAACTACTATACAACAACAGTTTCTGTCAAAACTTCAGAAGAAAAAGGATGAATATAAAGGATATCCTCTGGAATTGGAGCTTTTGGTAACCCTTGGATCAATACATCCTTGGTTGATCACAACTGCTGCCTGTGCTGATAAATACTTTAGTAGGGAGGAATTGCTGGAGCTTAAGAAGCACAAGGATGATGTGAAGAAGGGGTCAAAAGTGAAATTTGTTCTAAGTCTTGTGAATAGATGTATCATTAGAAAGGAAAAGATTTTGATCTTTTGCCATAACATCTCACCCATTAATTTATTTGTAGATATATTTGATAAGCTCTATAAGTGGAAGAAGGGTGAAGATGTTTTGGTCCTTCAAGGGGACCTAGAGCTATTTGAACGGGGCAGAGTGATGGATCAGTTTGAAGAACCAGGTGGTGCCTCAAAAGTACTACTTGCTTCCATTACAGCTTGTGCTGAAGGCATTAGCTTAACTGCAGCTTCACGGGTGATATTGTTGGACACAGAGTGGAATCCTTCAAAGCAAAAGCAAGCTGTTGCACGGGCATTTCGGCCTGGTCAGGAGAGGGTGGTTTATGTCTATCAGCTCTTGGAAACAGACACACTGGAAGAAGAAAAGAATAGTAGGACCAACTGGAAGGAGTGGGTTTCAAGTATGATATTTAGTGAAGCATTTGTGGAGGACCCTTCATGCTGGCAAGCGGAAAAAATTGAAGATGATTTATTAAGGGAGATAGTCGAGGAGGACTGGGCTAAATCAATCCATATGATAATGAAAAACGAGAAAGCTTCAAATGGGTTGATCAGAGGTAAAGAATAG 3792 0.4088 MRKRNLCRNQHPFHAHPFEAFYFGSWQAIELMRIEDGTVALHLAESEYVIEEKSPIPNLRIRPRKATLSDCTCFLRPGTEITVLWTLQQSESSDEENREPVWIDAKISSIERRPHEPECSCQFFVNFYITQDPLGTEKGTLSKDISVVELDQISILQKLGKYPCEDEHYRWKFSEDCSLLQRTKLFLGKFSSDLSWLVVTSVLKQAVFDVRSVQNRIVYQIVGGDHDKVSLNAVNFRVDNGISTPVIFPFVPADTIEADPLNGTNEAGPLPFCDIVDLRRSKRRNVQPDRFFSLGGFSESDIGSVRAGIHKVDYWRKEEMPLALPDEGDVHSIFSEKHIIDYEKGAHSLQIDSYEDFLVCKSKDRSREVKPILAAQNEDQHQFAIVPVPLIIEPIAHGEDHLHDETPWNESGEIGEISPKYYCTNGVPKLQRKNMSDLYMEVESRWEGKGPIRKLRRKRGFTIRTKTESYGEVRPHKKRPFSEPGYKEVIEAYMKNIESTINKEQPLVIDQWKELQVRNDLNQRRDCNSPSSVGDQEESSETEMLWREMEFSIASSYLLEENEGSNVEVLKEVVQESSNISEQVCQHEYILDEEIGVLCQLCGFVSTEIKDVSPPFFQPTGWITNREWRDEENSKRKQAENDGFNLFSIPASSDTPLSEGNDNVWALVPDLRKKLRLHQKKAFEFLWKNIAGSMVPALMEQEVKRRGGCVISHSPGAGKTFLVISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEIIKWKVPVPVYQIHGCRTYRYEIYKHKVETSPGIPRPNQDVMHVLDCLEKIQKWHAHPSILLMGYTSFLSLMREDSKFIHRRYMGEVLRQSPGILVLDEGHNPRSTGSRLRKALMKVKTNLRILLSGTLFQNNFSEYFNTLCLARPKFVNEVLRELDPKFKRNKNRRKRRYSSTESRARKFFTDEIAKRINSNVPEEQIEGLNMLRNLTSKFIDVYEGGSSDNLPGLQVYTLLMKSTTIQQQFLSKLQKKKDEYKGYPLELELLVTLGSIHPWLITTAACADKYFSREELLELKKHKDDVKKGSKVKFVLSLVNRCIIRKEKILIFCHNISPINLFVDIFDKLYKWKKGEDVLVLQGDLELFERGRVMDQFEEPGGASKVLLASITACAEGISLTAASRVILLDTEWNPSKQKQAVARAFRPGQERVVYVYQLLETDTLEEEKNSRTNWKEWVSSMIFSEAFVEDPSCWQAEKIEDDLLREIVEEDWAKSIHMIMKNEKASNGLIRGKE* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0124 1263 Gene3D - 653 948 IPR038718 -
Vvi13g0124 1263 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1066 1253 IPR001650 -
Vvi13g0124 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 928 IPR027417 -
Vvi13g0124 1263 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 50 1256 IPR044567 GO:0080188
Vvi13g0124 1263 SMART ultradead3 671 906 IPR014001 -
Vvi13g0124 1263 CDD DEXHc_ATRX-like 675 908 - -
Vvi13g0124 1263 CDD SF2_C_SNF 1051 1188 - -
Vvi13g0124 1263 Pfam Helicase conserved C-terminal domain 1070 1176 IPR001650 -
Vvi13g0124 1263 Gene3D - 981 1258 IPR027417 -
Vvi13g0124 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1215 IPR027417 -
Vvi13g0124 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 700 901 IPR014001 -
Vvi13g0124 1263 SMART helicmild6 1092 1177 IPR001650 -
Vvi13g0124 1263 Pfam SNF2-related domain 684 949 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0124 Vvi-Chr13 1072756 1078371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0124 1055 1195 RAD5 or RAD16-like Gene Family AT5G43530 34.483 3.70e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi13g0124 SNF2_N 4.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0124 K10875 - vvi:100250037 2523.81