Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g0120 | ATGGCTGCGGCGCCTGCGGATTCTTCGGACCCAAACAGAGCCCTAACAACCACACGGTTTTCCGAACTCAACCCGCCGCTGTCCGAGCCTGTTCTCGAAGCCCTGACCCAATCCGGTTTTCACTTTTGCACTCCGGTTCAGGCCGCCACCATACCTTTACTCTGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCGGGAAAAACCCTAGCCTTCGTTGTTCCTCTCGTCGAGATTCTCCGCCGCGCTTCTTCTGCCCCCAAGCCTCACCAGGTGTTGGGGGTAATTCTCTCTCCCACAAGGGAGTTGTCATCACAAATATATAATGTTGCACAACCTTTTATTTCAACATTGCCAAATGTTAAGTCAGTGCTTCTTGTTGGGGGAGTTGAGGTAAAATCTGATTTGAAGAAAATAGAAGAGGAAGGGGCAAATTTATTGATAGGCACACCTGGACGGCTATATGACATAATGGAACGCATGGATGTCTTGGATTTTCGGAATCTTGAGATTTTGATTTTGGACGAGGCTGATAGGCTTTTAGATATGGGATTCCAGAAGCAAATTACTTCCATCATTGCTCGCCTACCAAAGCTTCGCAGAACTGGTCTTTTCTCAGCTACTCAAACTGAGGCTGTTGAAGAGCTATCAAAGGCAGGACTGAGAAATCCTGTGAGGGTTGAAGTTCGAGCAGAGGCAAAATCACTTAATGATTCTGTATCATCACAACAATTAGCTTCTTCTAAAACACCTTCAGGCCTTAACATCGAGTATTTGGAATGCGAAGCAGATAAGAAACCGTCACAGCTTGTTGACTTGCTTATTAAGAACAAGTCCAAAAAAATTATAATCTACTTCATGACTTGTGCTTGTGTTGATTACTGGGGAGTCATTCTTCCACGTCTCTCTGTTCTGAAGGGTTTCTCTTTGATCCCTCTTCATGGGAAAATGAAGCAGACTGCAAGGGAGAAAGCATTGGCTTCATTTACATCTCTTTCAAGTGGTATTCTTCTATGTACCGATGTTGCAGCTCGTGGACTTGACATTCCTGGCGTTGATTGCATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAGGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAGATTCGGTCTGCCGCCAAAAAGGATCGTGATGTTATGGAGAAGGGGCTCAGGGCATTTGTTTCATTTGTGCGTGCATATAAAGAGCATCATTGCTCCTACATTTTCAGGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGTTTCACCCCAGTTGAAGATATTAATTTTGAGGAGATCAAGTATAAGGACAAATCTCGTGAAAAGCAAAGAAAAAAGAATCTTCAGGCCAAGAAAGCGGTACAAGACCAAGAACCAAAACCCCAGAAACCCAACAAAACTCCACATACAGCACCTACTGTCATGAGGAAGAAAACAGCCAAGCAGAGGCGCACAGCCCAGACAATCGAAGACGAGGATGACTTGGCACGAGAGTACCGGCTGCTGAAAAAGCTCAAGAAGGGGACAATTGATGAAAGTGAATTTGCGAAGTTAACAGGAACTGAAGAGTTGCTTTGA | 1788 | 0.4541 | MAAAPADSSDPNRALTTTRFSELNPPLSEPVLEALTQSGFHFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRASSAPKPHQVLGVILSPTRELSSQIYNVAQPFISTLPNVKSVLLVGGVEVKSDLKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILILDEADRLLDMGFQKQITSIIARLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKSLNDSVSSQQLASSKTPSGLNIEYLECEADKKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVILPRLSVLKGFSLIPLHGKMKQTAREKALASFTSLSSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARMGRQGSAVVFLLPKEEAYVEFLRIRRVPLQGMTCSSDASDVVPQIRSAAKKDRDVMEKGLRAFVSFVRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTEGFTPVEDINFEEIKYKDKSREKQRKKNLQAKKAVQDQEPKPQKPNKTPHTAPTVMRKKTAKQRRTAQTIEDEDDLAREYRLLKKLKKGTIDESEFAKLTGTEELL* | 596 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g0120 | 595 | Pfam | Domain of unknown function (DUF4217) | 421 | 479 | IPR025313 | - | |
Vvi13g0120 | 595 | FunFam | RNA helicase | 14 | 232 | - | - | |
Vvi13g0120 | 595 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 20 | 48 | IPR014014 | GO:0003724 | |
Vvi13g0120 | 595 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 175 | 183 | IPR000629 | - | |
Vvi13g0120 | 595 | CDD | SF2_C_DEAD | 259 | 389 | - | - | |
Vvi13g0120 | 595 | Gene3D | - | 259 | 493 | IPR027417 | - | |
Vvi13g0120 | 595 | MobiDBLite | consensus disorder prediction | 507 | 533 | - | - | |
Vvi13g0120 | 595 | Pfam | DEAD/DEAH box helicase | 44 | 218 | IPR011545 | GO:0003676|GO:0005524 | |
Vvi13g0120 | 595 | Pfam | Helicase conserved C-terminal domain | 268 | 380 | IPR001650 | - | |
Vvi13g0120 | 595 | SMART | helicmild6 | 295 | 380 | IPR001650 | - | |
Vvi13g0120 | 595 | CDD | DEADc_DDX55 | 31 | 229 | - | - | |
Vvi13g0120 | 595 | SMART | DUF4217_3 | 418 | 481 | IPR025313 | - | |
Vvi13g0120 | 595 | SMART | ultradead3 | 39 | 245 | IPR014001 | - | |
Vvi13g0120 | 595 | MobiDBLite | consensus disorder prediction | 507 | 563 | - | - | |
Vvi13g0120 | 595 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 51 | 229 | IPR014001 | - | |
Vvi13g0120 | 595 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 96 | 399 | IPR027417 | - | |
Vvi13g0120 | 595 | Coils | Coil | 508 | 528 | - | - | |
Vvi13g0120 | 595 | Gene3D | - | 4 | 232 | IPR027417 | - | |
Vvi13g0120 | 595 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 271 | 427 | IPR001650 | - | |
Vvi13g0120 | 595 | PANTHER | RNA HELICASE | 15 | 515 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi13g0120 | Vvi-Chr13 | 1038541 | 1044951 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi13g0120 | 18 | 389 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.759 | 2.80e-45 | 164 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g0120 | K14809 | - | vvi:100260487 | 1158.67 |