Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0120 ATGGCTGCGGCGCCTGCGGATTCTTCGGACCCAAACAGAGCCCTAACAACCACACGGTTTTCCGAACTCAACCCGCCGCTGTCCGAGCCTGTTCTCGAAGCCCTGACCCAATCCGGTTTTCACTTTTGCACTCCGGTTCAGGCCGCCACCATACCTTTACTCTGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCGGGAAAAACCCTAGCCTTCGTTGTTCCTCTCGTCGAGATTCTCCGCCGCGCTTCTTCTGCCCCCAAGCCTCACCAGGTGTTGGGGGTAATTCTCTCTCCCACAAGGGAGTTGTCATCACAAATATATAATGTTGCACAACCTTTTATTTCAACATTGCCAAATGTTAAGTCAGTGCTTCTTGTTGGGGGAGTTGAGGTAAAATCTGATTTGAAGAAAATAGAAGAGGAAGGGGCAAATTTATTGATAGGCACACCTGGACGGCTATATGACATAATGGAACGCATGGATGTCTTGGATTTTCGGAATCTTGAGATTTTGATTTTGGACGAGGCTGATAGGCTTTTAGATATGGGATTCCAGAAGCAAATTACTTCCATCATTGCTCGCCTACCAAAGCTTCGCAGAACTGGTCTTTTCTCAGCTACTCAAACTGAGGCTGTTGAAGAGCTATCAAAGGCAGGACTGAGAAATCCTGTGAGGGTTGAAGTTCGAGCAGAGGCAAAATCACTTAATGATTCTGTATCATCACAACAATTAGCTTCTTCTAAAACACCTTCAGGCCTTAACATCGAGTATTTGGAATGCGAAGCAGATAAGAAACCGTCACAGCTTGTTGACTTGCTTATTAAGAACAAGTCCAAAAAAATTATAATCTACTTCATGACTTGTGCTTGTGTTGATTACTGGGGAGTCATTCTTCCACGTCTCTCTGTTCTGAAGGGTTTCTCTTTGATCCCTCTTCATGGGAAAATGAAGCAGACTGCAAGGGAGAAAGCATTGGCTTCATTTACATCTCTTTCAAGTGGTATTCTTCTATGTACCGATGTTGCAGCTCGTGGACTTGACATTCCTGGCGTTGATTGCATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAGGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAGATTCGGTCTGCCGCCAAAAAGGATCGTGATGTTATGGAGAAGGGGCTCAGGGCATTTGTTTCATTTGTGCGTGCATATAAAGAGCATCATTGCTCCTACATTTTCAGGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGTTTCACCCCAGTTGAAGATATTAATTTTGAGGAGATCAAGTATAAGGACAAATCTCGTGAAAAGCAAAGAAAAAAGAATCTTCAGGCCAAGAAAGCGGTACAAGACCAAGAACCAAAACCCCAGAAACCCAACAAAACTCCACATACAGCACCTACTGTCATGAGGAAGAAAACAGCCAAGCAGAGGCGCACAGCCCAGACAATCGAAGACGAGGATGACTTGGCACGAGAGTACCGGCTGCTGAAAAAGCTCAAGAAGGGGACAATTGATGAAAGTGAATTTGCGAAGTTAACAGGAACTGAAGAGTTGCTTTGA 1788 0.4541 MAAAPADSSDPNRALTTTRFSELNPPLSEPVLEALTQSGFHFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRASSAPKPHQVLGVILSPTRELSSQIYNVAQPFISTLPNVKSVLLVGGVEVKSDLKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILILDEADRLLDMGFQKQITSIIARLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKSLNDSVSSQQLASSKTPSGLNIEYLECEADKKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVILPRLSVLKGFSLIPLHGKMKQTAREKALASFTSLSSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARMGRQGSAVVFLLPKEEAYVEFLRIRRVPLQGMTCSSDASDVVPQIRSAAKKDRDVMEKGLRAFVSFVRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTEGFTPVEDINFEEIKYKDKSREKQRKKNLQAKKAVQDQEPKPQKPNKTPHTAPTVMRKKTAKQRRTAQTIEDEDDLAREYRLLKKLKKGTIDESEFAKLTGTEELL* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0120 595 Pfam Domain of unknown function (DUF4217) 421 479 IPR025313 -
Vvi13g0120 595 FunFam RNA helicase 14 232 - -
Vvi13g0120 595 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 20 48 IPR014014 GO:0003724
Vvi13g0120 595 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 175 183 IPR000629 -
Vvi13g0120 595 CDD SF2_C_DEAD 259 389 - -
Vvi13g0120 595 Gene3D - 259 493 IPR027417 -
Vvi13g0120 595 MobiDBLite consensus disorder prediction 507 533 - -
Vvi13g0120 595 Pfam DEAD/DEAH box helicase 44 218 IPR011545 GO:0003676|GO:0005524
Vvi13g0120 595 Pfam Helicase conserved C-terminal domain 268 380 IPR001650 -
Vvi13g0120 595 SMART helicmild6 295 380 IPR001650 -
Vvi13g0120 595 CDD DEADc_DDX55 31 229 - -
Vvi13g0120 595 SMART DUF4217_3 418 481 IPR025313 -
Vvi13g0120 595 SMART ultradead3 39 245 IPR014001 -
Vvi13g0120 595 MobiDBLite consensus disorder prediction 507 563 - -
Vvi13g0120 595 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 229 IPR014001 -
Vvi13g0120 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 399 IPR027417 -
Vvi13g0120 595 Coils Coil 508 528 - -
Vvi13g0120 595 Gene3D - 4 232 IPR027417 -
Vvi13g0120 595 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 427 IPR001650 -
Vvi13g0120 595 PANTHER RNA HELICASE 15 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0120 Vvi-Chr13 1038541 1044951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0120 18 389 Eukaryotic Initiation Factors Gene Family AT3G19760 29.759 2.80e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0120 K14809 - vvi:100260487 1158.67