Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0118 ATGGGCGGAAATTCACCCTGCGCCTCCTGCAAGCTCCTCCGCCGCCGATGCGCCAAGGACTGCATCTTCGCCCCCTACTTCCCTTCGGACGACCCCCACAAGTTCTCCATCGTTCACAAGGTCTTCGGCGCCAGCAATGTCAGCAAAATGCTGCAGGAGCTGCCGGTTCATCAGAGAGCAGATGCAGTGAGCAGTCTAGTATACGAGGCGAATGCGAGAGTTAGAGACCCGGTTTACGGGTGTGTCGGAGCCATATCATACCTGCAGACTCAGGTTTCTCAGCTCCAAATGCAGCTGGCCGTGGCTCAAGCCGAGATATTCTGCATCCAGATGCAGCAAGAGCAGGTGGAGATACCAGCAGCCCATCAAACCGCCGCTGCCGGCGACGGAGACGACGGAAAATCGTTTTTCCTCCACGACGCCCTCCCTGAGTACCTAAATTTCGCTTCAAGTAGTAGTGTAATCCATGACTCTCTCAAGCGAGAGAGCCTCTTTAGCCATGACATGGTTTCGTAA 516 0.5523 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFSIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAVAQAEIFCIQMQQEQVEIPAAHQTAAAGDGDDGKSFFLHDALPEYLNFASSSSVIHDSLKRESLFSHDMVS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0118 171 Coils Coil 85 105 - -
Vvi13g0118 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vvi13g0118 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 123 - -
Vvi13g0118 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0118 Vvi-Chr13 1022072 1022675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0118 3 114 AS2 family AT2G30130 92.857 5.95e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0118 LOB 1.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0118 - - vvi:100243391 345.895