Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0115 ATGCTAGACAAGCTTGGAGGTGCATTTGCTCCAAAGCCTTCATCTGGACCTCACAAATCCAGGGAATGCCTGCCATTGATCCTCATTTTACGGAACAGATTGAAGTATGCTCTCACATACCGTGAGGTCATTGCCATCTTGATGCAACGACATATTTTTGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGGATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACACCAAGGGCCGGTTCCGACTCCACTCAGTTAGGGATGAAGAGGCAAAGTTTAAGCTCTGCAAGGTCCGTTCTGTCCAGTTTGGGCAGAAGGGCATCCCATACTTAAACACCTATGATGGGCGGACCATTCGCTACCCAGACCCACTGATCAAGGCCAATGACACTATCAAGCTTGACCTAGAGAGCAACAAGATCACCGACTTCATCAAATTTGATGTTGGGAATGTTGTCATGGTGACTGGTGGAAGGAACAGGGGCCGTGTTGGAGTCATCAAGAACAGGGAGAAGCACAAGGGGACCTTTGAGACCATCCACATTCAGGATGCCACTGGGCATGAATTTGCAACTCGTTTGGGCAATGTGTTCATCATTGGCAAGGGGACAAAGCCTTGGGTATCTCTTCCTAAGGGTAAGGGTATCAAGCTGTCTATCATCGAAGAGGCCAAGAAGAGGCTTGCAGCCCAAGCAGCATCCAGCGCTTGA 741 0.475 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHIFVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHIQDATGHEFATRLGNVFIIGKGTKPWVSLPKGKGIKLSIIEEAKKRLAAQAASSA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0115 246 PIRSF RPS4a_RPS4e 1 223 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vvi13g0115 246 FunFam 40S ribosomal protein S4 1 99 - -
Vvi13g0115 246 Pfam 40S ribosomal protein S4 C-terminus 194 241 IPR032277 -
Vvi13g0115 246 FunFam 40S ribosomal protein S4 157 227 - -
Vvi13g0115 246 FunFam 40S ribosomal protein S4 104 154 - -
Vvi13g0115 246 Hamap 30S ribosomal protein S4e [rps4e]. 3 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vvi13g0115 246 Gene3D - 104 154 IPR038237 -
Vvi13g0115 246 CDD KOW_RPS4 157 211 IPR041982 -
Vvi13g0115 246 SMART s4_6 24 88 IPR002942 GO:0003723
Vvi13g0115 246 Pfam KOW motif 159 192 IPR005824 -
Vvi13g0115 246 Pfam S4 domain 29 72 IPR002942 GO:0003723
Vvi13g0115 246 CDD S4 33 94 - -
Vvi13g0115 246 Pfam Ribosomal family S4e 77 151 IPR013845 -
Vvi13g0115 246 ProSiteProfiles S4 RNA-binding domain profile. 24 86 - -
Vvi13g0115 246 Gene3D - 157 227 IPR014722 -
Vvi13g0115 246 Pfam RS4NT (NUC023) domain 1 21 IPR013843 -
Vvi13g0115 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 236 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vvi13g0115 246 Gene3D - 1 99 IPR036986 GO:0003723
Vvi13g0115 246 SMART kow_9 156 183 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0115 Vvi-Chr13 1000017 1002324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0115 1 244 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 91.393 2.83e-172 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0115 K02987 - vvi:100244922 471.47