Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0108 ATGGCGACGAACACGCCCAATTTGGAGTGCCGCATGTACGAAGCCAAGTACCCAGAAGTGGACATGGCGGTGATGATTCAGGTCAATAACATCGCCGACATGGGCGCGTACGTCTCGCTGCTCGAGTACAACAACATCGAGGGTATGATCCTCTTCTCCGAGCTCTCTCGACGTCGGATTCGAAGCGTGAGTAGCCTGATCAAGGTGGGACGCATCGAGCCTGTGATGGTCCTTAGGGTTGATAAGGAAAAAGGGTATATTGATTTGAGCAAGAGGAGGGTTTCAGAGGAGGATATTCAGGCGTGCGAGGAGAGGTACAATAAGAGCAAGCTTGTTCACTCGATTATGCGGCATGTTGCCGAGACGATGCAGCTTGATTTGGAGGATTTATACATCCACGTCGGATGGCCTTTATACCGAAAATATGGTCATGCTTTTGAGGCATTTAAGATAATTGTGACTGATCCTGATTCAGTTCTGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAAAGAATATTAGGAGAAGAATGACTCCACAACCATTGAAAATTCGGGCTGATATTGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATTAAGGAAGCAATGCGGAAAGCAGAAGCGGCGGGCAATAAGGATTGTCCAGTGAAAATTAAACTGGTTGCTCCTCCGCTTTATGTTCTTACTACTCAGACGCTTGACAAGGAGCAAGGAATGTCAATTCTCAATAATGCCATTGCTGCTTGCACAGAAGAAATTGATTGCCACAAAGGAAAGCTTATCGTAAAGGAGGCACCCAGAGCTGTGAGTGAACGGGACGATAAACTACTTGCTGAGCATATGGCTAAGCTAAGTCATCAGAACGAGGAAATCAGTGGCGATGAAGGCAGTGAAGAAGAGGAAGACACTGGCTTGGGAGACATTGATGTAGAGAACTCAGGTCCTGGCATAACAGACTGA 1035 0.4657 MATNTPNLECRMYEAKYPEVDMAVMIQVNNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMQLDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEVGPDGQEVTKVVPAISEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNKDCPVKIKLVAPPLYVLTTQTLDKEQGMSILNNAIAACTEEIDCHKGKLIVKEAPRAVSERDDKLLAEHMAKLSHQNEEISGDEGSEEEEDTGLGDIDVENSGPGITD* 345
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0108 344 MobiDBLite consensus disorder prediction 306 344 - -
Vvi13g0108 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Vvi13g0108 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Vvi13g0108 344 FunFam Eukaryotic translation initiation factor 2 subunit alpha 95 199 - -
Vvi13g0108 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 6 332 IPR011488 GO:0003723|GO:0003743
Vvi13g0108 344 SMART S1_6 19 92 IPR022967 -
Vvi13g0108 344 FunFam Eukaryotic translation initiation factor 2 subunit 1 205 327 - -
Vvi13g0108 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Vvi13g0108 344 SUPERFAMILY Nucleic acid-binding proteins 10 92 IPR012340 -
Vvi13g0108 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Vvi13g0108 344 Gene3D - 6 94 IPR012340 -
Vvi13g0108 344 FunFam Eukaryotic translation initiation factor 2 subunit alpha 7 94 - -
Vvi13g0108 344 MobiDBLite consensus disorder prediction 318 332 - -
Vvi13g0108 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Vvi13g0108 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Vvi13g0108 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 173 IPR024054 -
Vvi13g0108 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi13g0108 Vvi-Chr13 952302 956232 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0108 1 344 Eukaryotic Initiation Factors Gene Family AT5G05470 76.812 0.0 510
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0108 K03237 - vvi:100250061 657.907