Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g0108 | ATGGCGACGAACACGCCCAATTTGGAGTGCCGCATGTACGAAGCCAAGTACCCAGAAGTGGACATGGCGGTGATGATTCAGGTCAATAACATCGCCGACATGGGCGCGTACGTCTCGCTGCTCGAGTACAACAACATCGAGGGTATGATCCTCTTCTCCGAGCTCTCTCGACGTCGGATTCGAAGCGTGAGTAGCCTGATCAAGGTGGGACGCATCGAGCCTGTGATGGTCCTTAGGGTTGATAAGGAAAAAGGGTATATTGATTTGAGCAAGAGGAGGGTTTCAGAGGAGGATATTCAGGCGTGCGAGGAGAGGTACAATAAGAGCAAGCTTGTTCACTCGATTATGCGGCATGTTGCCGAGACGATGCAGCTTGATTTGGAGGATTTATACATCCACGTCGGATGGCCTTTATACCGAAAATATGGTCATGCTTTTGAGGCATTTAAGATAATTGTGACTGATCCTGATTCAGTTCTGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAAAGAATATTAGGAGAAGAATGACTCCACAACCATTGAAAATTCGGGCTGATATTGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATTAAGGAAGCAATGCGGAAAGCAGAAGCGGCGGGCAATAAGGATTGTCCAGTGAAAATTAAACTGGTTGCTCCTCCGCTTTATGTTCTTACTACTCAGACGCTTGACAAGGAGCAAGGAATGTCAATTCTCAATAATGCCATTGCTGCTTGCACAGAAGAAATTGATTGCCACAAAGGAAAGCTTATCGTAAAGGAGGCACCCAGAGCTGTGAGTGAACGGGACGATAAACTACTTGCTGAGCATATGGCTAAGCTAAGTCATCAGAACGAGGAAATCAGTGGCGATGAAGGCAGTGAAGAAGAGGAAGACACTGGCTTGGGAGACATTGATGTAGAGAACTCAGGTCCTGGCATAACAGACTGA | 1035 | 0.4657 | MATNTPNLECRMYEAKYPEVDMAVMIQVNNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMQLDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEVGPDGQEVTKVVPAISEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNKDCPVKIKLVAPPLYVLTTQTLDKEQGMSILNNAIAACTEEIDCHKGKLIVKEAPRAVSERDDKLLAEHMAKLSHQNEEISGDEGSEEEEDTGLGDIDVENSGPGITD* | 345 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g0108 | 344 | MobiDBLite | consensus disorder prediction | 306 | 344 | - | - | |
| Vvi13g0108 | 344 | Pfam | S1 RNA binding domain | 18 | 92 | IPR003029 | GO:0003676 | |
| Vvi13g0108 | 344 | SUPERFAMILY | eIF-2-alpha, C-terminal domain | 203 | 319 | IPR024055 | - | |
| Vvi13g0108 | 344 | FunFam | Eukaryotic translation initiation factor 2 subunit alpha | 95 | 199 | - | - | |
| Vvi13g0108 | 344 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 | 6 | 332 | IPR011488 | GO:0003723|GO:0003743 | |
| Vvi13g0108 | 344 | SMART | S1_6 | 19 | 92 | IPR022967 | - | |
| Vvi13g0108 | 344 | FunFam | Eukaryotic translation initiation factor 2 subunit 1 | 205 | 327 | - | - | |
| Vvi13g0108 | 344 | CDD | S1_IF2_alpha | 18 | 93 | IPR044126 | GO:0003723 | |
| Vvi13g0108 | 344 | SUPERFAMILY | Nucleic acid-binding proteins | 10 | 92 | IPR012340 | - | |
| Vvi13g0108 | 344 | SUPERFAMILY | eIF2alpha middle domain-like | 94 | 199 | IPR024054 | - | |
| Vvi13g0108 | 344 | Gene3D | - | 6 | 94 | IPR012340 | - | |
| Vvi13g0108 | 344 | FunFam | Eukaryotic translation initiation factor 2 subunit alpha | 7 | 94 | - | - | |
| Vvi13g0108 | 344 | MobiDBLite | consensus disorder prediction | 318 | 332 | - | - | |
| Vvi13g0108 | 344 | Pfam | Eukaryotic translation initiation factor 2 alpha subunit | 130 | 260 | IPR011488 | GO:0003723|GO:0003743 | |
| Vvi13g0108 | 344 | ProSiteProfiles | S1 domain profile. | 21 | 92 | IPR003029 | GO:0003676 | |
| Vvi13g0108 | 344 | Gene3D | Translation initiation factor 2; subunit 1; domain 2 | 95 | 173 | IPR024054 | - | |
| Vvi13g0108 | 344 | Gene3D | EIF_2_alpha | 205 | 327 | IPR024055 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi13g0108 | Vvi-Chr13 | 952302 | 956232 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi13g0108 | 1 | 344 | Eukaryotic Initiation Factors Gene Family | AT5G05470 | 76.812 | 0.0 | 510 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi13g0108 | K03237 | - | vvi:100250061 | 657.907 |