Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0102 ATGGCAAAAACTCTCCTCTTTCCCCTCTTCTCTCTGCTCCTCCTTAATCAAGCTTACTCTCAGTCTGATTATGGCTTCGTCTTCAATGGCTTCAAAGCTTCTGCATCCAACTTAAGCCTTGGTGGGGCTTCCCTCATCACGCCAAATGGGGCTCTCAGGCTTACAAACTCATCACACAACCTCACTGGCCATGCCTTCTACAACACCCCATTTCACTTTCTCAACAAGAACAGCCATGATTCCCAACACCCCACCACAGCTTCCTCCTTTGCCACAACCTTCGTTTTTGCCATTGTCCCCAGGTTTGCTGGTGGGTCTGGTGGGCATGGTTTTGTCTTCACTGTTTCTCCCACCAAGAACCTTTCAGATGGTGGACTTGGTAATCTTTTTGGTCTTTTTAATGAGGTCACCATGGGGAACTTCTCCAACCATTTGTTTGCGGTTGAGTTTGATACAGTTCAATCCCTGGTTATGTATGGAGATATCGATGATAACCATGTTGGTATAGACATCAATACTGTTAGGTCTAATGCTTCTAAGCCAGCTTCATACTATGATCACTCCTCCAAATCCTCTCATGAAGTGGTTTTGGAGAGTGGGAATCCAATCCAAGCTTGGATCGAGTATGATGGAGCTCAAAAAATCGTCAATGTCACCATTTCCCCTGCTTCTCTTCCTAAACCAAGCAAACCCCTCTTGTCTCTAGCCATGGACTTATCCCCTATCTTTAAAGAGTCCATGTATGTTGGCTTCTCAGCTGCCACTGAGAAGCTTGCTAGCTCTCATTACATTCTGGGGTGGAGTTTGAAGATGGGTAGTACAGAAGCAGACCCTCTTGATCTCTCTAAAATCCCTTCTCCCCCAAGAAATGGAACCCCATCTCCAGGCCTTGGGAGAAGAGGGATTGAGATTGGAGCAGCGTCAGCAATGGTGACCCTTGCGTTGCTTCTGTGTGGAATCGCCATTTCTGTGTATATGCTAAGAAGGGCAAGGCTAGCTGAGGTCCTGGAAGATTGGGAATTGGACTTCCCCCATAGGTTTAGATACAAAGACCTTTATATTGCCACAAAGGGCTTCAAGGAGAGCCAGATTCTGGGCAAAGGTGGGTTCGGTTCCGTCTACAAGGGGGTGCTGCCAAAGACTAGAGAAGAAGTTGCTGTAAAGAGAATTTCCCACAATTCCAAGCAGGGAGTGAAGGAGTTTGTTGCAGAGATTGCAAGCCTAGGCAAGCTGAGGCACAGGCACTTGGTTCATCTCCAAGGTTGGTGTAAGCGAAAAGGCGATCTCCTTCTTGTTTATGATTATATGTCCAATGGCAGCCTGGACACCTTCCTGTTTCAAGAAGACAAGAACCTTGATTGGGGACAGAGGTTCAGGATCCTCAAGGAGATTGCTGCAGGCCTCCTATATTTACATGAAGAATGGGAACAGGTAGTTGTCCATAGGGATGTGAAGGCCAACAATGTCCTGCTTGACTCAAATATGAATGCCCGGCTAGGAGACTTCGGCCTGGCCAAACTATATGAGCATGGGAAGAACCCCAGCACCACCCATGTGGTGGGCACAGTGGGGTACATAGCACCGGAGCTCTCCCTCACTGGAAAGGCCACCGCAAGCTCCGATGTATTCGCCTTTGGGGCAGTACTACTAGAAGTGGCATGTGGGAGGAGGCCTCTAGACCCCAATGCCTCGTCCGGGAAACAGATGATTCTACAAGATTGGGTGACACAGTGTCATCAGAGGGGTCATATACTTGAAGCTGCAGATCCAAAGCTTGGGAATTCATATGTGAAGGAGGAGATTGAATTGGTTTTGAAGGTTGGCCTCCTCTGTTCTCACCCAGAGCCACAGGCTAGGCCTAATATGCAGCAGGTTACAAGATATCTCAGTGGCTTCGACCCACTCCCCGAGGTTGATGCTTCAAGTTTAGGTTTCTTTGTGGGCTCATTGGACTCCAAAACTGACTCACACCCATCATCCTATGGAGTGATGTCTGTTGGATCCTTAGCATCTGGGCGGTAG 2022 0.4817 MAKTLLFPLFSLLLLNQAYSQSDYGFVFNGFKASASNLSLGGASLITPNGALRLTNSSHNLTGHAFYNTPFHFLNKNSHDSQHPTTASSFATTFVFAIVPRFAGGSGGHGFVFTVSPTKNLSDGGLGNLFGLFNEVTMGNFSNHLFAVEFDTVQSLVMYGDIDDNHVGIDINTVRSNASKPASYYDHSSKSSHEVVLESGNPIQAWIEYDGAQKIVNVTISPASLPKPSKPLLSLAMDLSPIFKESMYVGFSAATEKLASSHYILGWSLKMGSTEADPLDLSKIPSPPRNGTPSPGLGRRGIEIGAASAMVTLALLLCGIAISVYMLRRARLAEVLEDWELDFPHRFRYKDLYIATKGFKESQILGKGGFGSVYKGVLPKTREEVAVKRISHNSKQGVKEFVAEIASLGKLRHRHLVHLQGWCKRKGDLLLVYDYMSNGSLDTFLFQEDKNLDWGQRFRILKEIAAGLLYLHEEWEQVVVHRDVKANNVLLDSNMNARLGDFGLAKLYEHGKNPSTTHVVGTVGYIAPELSLTGKATASSDVFAFGAVLLEVACGRRPLDPNASSGKQMILQDWVTQCHQRGHILEAADPKLGNSYVKEEIELVLKVGLLCSHPEPQARPNMQQVTRYLSGFDPLPEVDASSLGFFVGSLDSKTDSHPSSYGVMSVGSLASGR* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0102 673 MobiDBLite consensus disorder prediction 652 673 - -
Vvi13g0102 673 Gene3D Phosphorylase Kinase; domain 1 344 435 - -
Vvi13g0102 673 Pfam Protein kinase domain 359 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0102 673 SUPERFAMILY Protein kinase-like (PK-like) 342 637 IPR011009 -
Vvi13g0102 673 CDD lectin_legume_LecRK_Arcelin_ConA 26 271 IPR001220 GO:0030246
Vvi13g0102 673 ProSiteProfiles Protein kinase domain profile. 359 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0102 673 Gene3D - 22 272 - -
Vvi13g0102 673 PANTHER - 42 631 - -
Vvi13g0102 673 CDD STKc_IRAK 365 632 - -
Vvi13g0102 673 Pfam Legume lectin domain 26 282 IPR001220 GO:0030246
Vvi13g0102 673 MobiDBLite consensus disorder prediction 278 297 - -
Vvi13g0102 673 FunFam Lectin-domain containing receptor kinase A4.3 344 435 - -
Vvi13g0102 673 SMART serkin_6 359 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0102 673 ProSitePatterns Protein kinases ATP-binding region signature. 365 388 IPR017441 GO:0005524
Vvi13g0102 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vvi13g0102 673 FunFam L-type lectin-domain containing receptor kinase V.9 22 277 - -
Vvi13g0102 673 FunFam L-type lectin-domain containing receptor kinase S.4 436 642 - -
Vvi13g0102 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 271 IPR013320 -
Vvi13g0102 673 Gene3D Transferase(Phosphotransferase) domain 1 436 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0102 Vvi-Chr13 921750 923771 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0102 16 636 Receptor kinase-like Gene Family AT4G29050 50.395 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi13g0102 Pkinase 7.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0102 - - vvi:100267317 1318.52