Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0100 ATGGCAAAACCTCTCCTCTTTCCCCTCTTCTCTCTGCTCCTCCTTAATCAAGCTTACTCTCAGTCTGATTATGGCTTCATCTTCAATGGCTTCAAAGCTTCTGCATCCAACTTAAGCCTTGGTGGGGCATCCCTCACCACGCCAAATGGGGCTCTCAGGCTTACAAACTCATCACCCAACCTCACTGGCCATGCCTTCTACAACACCCCATTTCACTTTCTCAACAAGAACAGCCATGATTCCCAACACCCCACCACAGCTTCCTCCTTTGCCACAACCTTCATCTTTGCCATTGTCCCCAGCTATGTTGGTGGGTCTGGTGGGCATGGTTTTGTCTTCACCGTTTCTCCCTCCAAGAACCTTTCAGACGGTGGACGTGGTAATCTTTTTGGTCTTTTTAATGAGGCCACCATGGGGAACTTCTCCAACCATTTGTTTGCTGTTGAGTTTGATACAGTTCAATCCCTGGTTATGTATGGAGATATCGATGATAACCATGTTGGTATAGACATCAATACTGTTAGGTCTAATGCTTCTAAGTCAGCTTCATACTATGATAACTCCTCCAAATCCTCTCATGAAGTGGTTTTGGAGAGTGGGAATCCAATCCAAGCTTGGATTGAGTATGATGGAGCTCAAAAAATCGTCAATGTCACCATTTCCCCTGCTTCTCTTCCTAAACCAAGCAAACCCCTCTTGTCCCTAGCCATGGACTTATCCCCTATCTTTAAAGAGTCCATGTATGTTGGCTTCTCAGCTGCCACTGGGAAGCATCCTAACTCTCATTACATTCTGGGGTGGAGTTTGAAGATGGGTCGTACAGAAGAAGACCCTCTTGATCTCTCTAAAATCCCTTCTCCCCCAAGAAATGGAACCCCATCTCCAGGCCTTGGGAGGAGAAGAGGGATTGAGATTGGAGCAGCGTCAACAATGGTGACCCTTGCGTTACTTCTGTGTGGAATCACTATTTCTGTGTATATGCTAAGAAGGGCAAGGCTAGCTGAGGTCCTGGAAGATTGGGAATTGGACTTCCCCCATAGGTTTAGATACAAAGACCTTTATATTGCCACAAAGGGCTTCAAGGAGAGCCAGATTCTCGGCAAAGGCGTGTTCGGTTCCGTCTACAAGGGGGTGCTGCCAAAGACTAGAGAAGAAGTTGCTGTAAAGAGAATTTCCCACAATTCCAAGCAGGGAGTGAAGGAGTTTATTGCAGAGATTGCAAGCCTAGGAAAGCTGAGGCACAGGCACTTGGTTCATCTCCAAGGTTGGTGTAAGCGAAAAGGCGATCTCCTTCTTGTTTATGATTATATGTCCAATGGCAGCCTGGACACCTTCCTGTTTCAAGAAGACAAGAACCTTGATTGGGGACAGAGGTTCAGGATCCTCAAGGAGATTGCTGCAGGCCTCCTATATTTACATGAAGAATGGGAACAGGTAGTTGTCCATAGGGATGTGAAGGCCAACAATGTCCTGCTTGACTCAAATATGAATTCCCGGCTAGGAGACTTCGGCCTGGCCAAACTATATGAGCATGGGAAGAACCCTAGCACCACCCATGTGGTGGGCACAGTGGGGTACATAGCACCGGAGCTCTCCCTCACTGGAAAGGCCACCGCAAGCTCCGATGTATTCGCCTTTGGGGCAGTACTACTAGAAGTGGCATGTGGGAGGAGGCCTCTAGACCCCAATGCCTCGTCCGGGAAACAAATGATTCTACAAGATTGGGTGGCACAGTGTCATCAGAGGGGTCATATACTTGAAGCTGCAGATCCAAAGCTTGGCAATTCATATGTGAAGAAGGAGATTGAATTGGTTTTGAAGGTTGGCCTCCTCTGCTCTTACCCAGAGCCACAGGCTAGGCCCAATATGCAGCAGGTTACAAGATATCTCAGTGGCTTTGACCCACTCCCCGAGGTTGATGCTTCAAGTTTAGGTTTCTTTGTGGGCTCATTGGACTCCAAAGCTGACTCACACCCATCATCCTATGGAGTGATGTCTGTTGGATCCTTAGCATCTGGGCGGTAG 2025 0.479 MAKPLLFPLFSLLLLNQAYSQSDYGFIFNGFKASASNLSLGGASLTTPNGALRLTNSSPNLTGHAFYNTPFHFLNKNSHDSQHPTTASSFATTFIFAIVPSYVGGSGGHGFVFTVSPSKNLSDGGRGNLFGLFNEATMGNFSNHLFAVEFDTVQSLVMYGDIDDNHVGIDINTVRSNASKSASYYDNSSKSSHEVVLESGNPIQAWIEYDGAQKIVNVTISPASLPKPSKPLLSLAMDLSPIFKESMYVGFSAATGKHPNSHYILGWSLKMGRTEEDPLDLSKIPSPPRNGTPSPGLGRRRGIEIGAASTMVTLALLLCGITISVYMLRRARLAEVLEDWELDFPHRFRYKDLYIATKGFKESQILGKGVFGSVYKGVLPKTREEVAVKRISHNSKQGVKEFIAEIASLGKLRHRHLVHLQGWCKRKGDLLLVYDYMSNGSLDTFLFQEDKNLDWGQRFRILKEIAAGLLYLHEEWEQVVVHRDVKANNVLLDSNMNSRLGDFGLAKLYEHGKNPSTTHVVGTVGYIAPELSLTGKATASSDVFAFGAVLLEVACGRRPLDPNASSGKQMILQDWVAQCHQRGHILEAADPKLGNSYVKKEIELVLKVGLLCSYPEPQARPNMQQVTRYLSGFDPLPEVDASSLGFFVGSLDSKADSHPSSYGVMSVGSLASGR* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0100 674 Gene3D Transferase(Phosphotransferase) domain 1 437 640 - -
Vvi13g0100 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 271 IPR013320 -
Vvi13g0100 674 FunFam L-type lectin-domain containing receptor kinase V.9 22 277 - -
Vvi13g0100 674 Pfam Protein kinase domain 360 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0100 674 CDD lectin_legume_LecRK_Arcelin_ConA 26 271 IPR001220 GO:0030246
Vvi13g0100 674 Gene3D - 22 273 - -
Vvi13g0100 674 SMART serkin_6 360 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0100 674 FunFam Lectin-domain containing receptor kinase A4.3 345 436 - -
Vvi13g0100 674 Pfam Legume lectin domain 26 278 IPR001220 GO:0030246
Vvi13g0100 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Vvi13g0100 674 PANTHER - 41 632 - -
Vvi13g0100 674 ProSitePatterns Protein kinases ATP-binding region signature. 366 389 IPR017441 GO:0005524
Vvi13g0100 674 ProSiteProfiles Protein kinase domain profile. 360 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0100 674 SUPERFAMILY Protein kinase-like (PK-like) 343 638 IPR011009 -
Vvi13g0100 674 MobiDBLite consensus disorder prediction 278 298 - -
Vvi13g0100 674 FunFam L-type lectin-domain containing receptor kinase S.4 437 643 - -
Vvi13g0100 674 Gene3D Phosphorylase Kinase; domain 1 345 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0100 Vvi-Chr13 897131 899155 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0100 16 637 Receptor kinase-like Gene Family AT4G29050 50.556 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi13g0100 Pkinase 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0100 - - vvi:100260386 1269.6