Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0099 ATGAGAAACTTCTTCTCCTTCTTTTTGTGGGACTGGTCTCGGCTCGGAGGGATGTGGGGAGGTTTTAAGAGAGAGGGAGTTGTAGGAAGAGCTAGTCACAAGCTTGAGAGAGAAGATGAGCATGAGAGCAGATCTGGAACTAATAACATGGACGGTGCTTCTGGGGATGATCAGGATGCTATCAACAACCCACCAAGGAAGAAGAGATACCACCGACACACTCCTCGGCAAATCCAAGAACTTGAAGCCCTATTCAAGGAGTGTCTTCATCCTGATGAAAAGCAAATGTTGGAACTCAACAAAAGGCTTTGCTTGGAGACTAGGCAAGTGAAATTCTAG 339 0.4631 MRNFFSFFLWDWSRLGGMWGGFKREGVVGRASHKLEREDEHESRSGTNNMDGASGDDQDAINNPPRKKRYHRHTPRQIQELEALFKECLHPDEKQMLELNKRLCLETRQVKF* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0099 112 ProSiteProfiles 'Homeobox' domain profile. 64 112 IPR001356 GO:0003677
Vvi13g0099 112 Pfam Homeodomain 67 111 IPR001356 GO:0003677
Vvi13g0099 112 CDD homeodomain 67 111 IPR001356 GO:0003677
Vvi13g0099 112 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 112 IPR042160 -
Vvi13g0099 112 MobiDBLite consensus disorder prediction 30 74 - -
Vvi13g0099 112 MobiDBLite consensus disorder prediction 30 46 - -
Vvi13g0099 112 Gene3D - 53 112 - -
Vvi13g0099 112 SUPERFAMILY Homeodomain-like 49 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0099 Vvi-Chr13 892004 892342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0099 25 112 Homeobox Transcription Factor Family AT4G00730 72.727 3.26e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi13g0099 Homeodomain 3.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0099 K09338 - tcc:18614208 148.288