Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0098 ATGGACTTATCCCCTATCTTTAAAGAGTCCATGTATGTTGGCTTCTCTGCTGCCACTGAGATGCATCCTAACTCTCATTACATTCTGGGGTGGAGTTTGAAGATGGGTAGTACAGAAGCAGACCCTCTTGATCTCTCTAAAATCCCTTCTCCCCCAAGAAATGGAACCCCATCTCCAGGCCTTGGGAGAAGAGGGATTAAGATTGGAGCATCGTCAGCAATGGTGACCCTTGCGTTACTTCTGTGTGGAATCACCATTTCTGTGTATATGCTAAGAAGGGCAAGGCTAGCTGAGGTCCTGGAAGATTGGGAATTGGACTTCCCCCATAGGTTTAGATACAAAGACCTTTATATTGCCACAAAGGGCTTCAAGGAGAGCCAGATTGTCGGCAAAGGGGGGTTCGGTTCCGTCTACAAGGGGGTGCTGCCAAAGACTAGAGAAGAAGTTGCTGTAAAGAGAATTTCCCACAATTCCAAGCAGGGAGTGAAGGAGTTTGTTGCAGAGATTGCAAGCCTAGGAAAGCTGAGGCACAGGCACTTGGTTCATCTCCAAGGTTGGTGTAAGCGAAAAGGCGATCTCCTTCTTGTTTATGATTATATGTCCAATGGCAGCCTGGACACCTTCCTGTTTCAAGAAGACAAGAACCTGGATTGGGGACAGAGGTTCAGGATCCTCAAGGAGATTGCTGCAGGCCTCCTATATTTACATGAAGAATGGGAACAAGTAGTTGTCCATAGGGATGTGAAGGCCAACAATGTCCTGCTTGACTCAAATATGAATGCCCGGCTAGGAGACTTCGGCCTGGCCAAACTATATGAGCATGGGAAGAACCCCAGAACCACCCATGTGGTGGGCACAGTGGGGTACATAGCACCGGAGCTCTCCCTCACTGGAAAGGCCACCGCAAGCTCCGATGTATTCGCCTTTGGGGCAGTACTACTAGAAGTGGCATGTGGGAGGAGGCCTCTAGACCCCAATGCCTCGTCCGGGAAACAAATGATTCTACAAGATTGGGTGGCACAGTGTCATCAGAGGGGTCATATACTTGAAGCTGCAAATCGAAAGCTTGGGAATTCATATGTGAAGGAGGAGATTGAATTGGTTTTGAAGGTTGGCCTCCTCTGCTCTGACCCAGAGCCACAGGCTAGGCCTAATATGCAGCAGGTTACAAGATATCTCAGTGGCTTTGACCCACTCCCCGAGGTTGATGCTTCAAGTTTAGGTTTCTTTGTGGGCTCATTGGACTCCAAAGCTGACTCACACCCATCATCCTATGGAGTGATGTCTGCTGGATCCTTAGCAACTGGGCGGTAG 1314 0.4901 MDLSPIFKESMYVGFSAATEMHPNSHYILGWSLKMGSTEADPLDLSKIPSPPRNGTPSPGLGRRGIKIGASSAMVTLALLLCGITISVYMLRRARLAEVLEDWELDFPHRFRYKDLYIATKGFKESQIVGKGGFGSVYKGVLPKTREEVAVKRISHNSKQGVKEFVAEIASLGKLRHRHLVHLQGWCKRKGDLLLVYDYMSNGSLDTFLFQEDKNLDWGQRFRILKEIAAGLLYLHEEWEQVVVHRDVKANNVLLDSNMNARLGDFGLAKLYEHGKNPRTTHVVGTVGYIAPELSLTGKATASSDVFAFGAVLLEVACGRRPLDPNASSGKQMILQDWVAQCHQRGHILEAANRKLGNSYVKEEIELVLKVGLLCSDPEPQARPNMQQVTRYLSGFDPLPEVDASSLGFFVGSLDSKADSHPSSYGVMSAGSLATGR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0098 437 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Vvi13g0098 437 Gene3D - 1 50 - -
Vvi13g0098 437 FunFam L-type lectin-domain containing receptor kinase S.4 200 406 - -
Vvi13g0098 437 MobiDBLite consensus disorder prediction 43 62 - -
Vvi13g0098 437 Pfam Legume lectin domain 1 46 IPR001220 GO:0030246
Vvi13g0098 437 ProSiteProfiles Protein kinase domain profile. 123 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0098 437 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 145 IPR013320 -
Vvi13g0098 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Vvi13g0098 437 Gene3D Phosphorylase Kinase; domain 1 108 199 - -
Vvi13g0098 437 MobiDBLite consensus disorder prediction 417 437 - -
Vvi13g0098 437 PANTHER - 3 395 - -
Vvi13g0098 437 MobiDBLite consensus disorder prediction 416 437 - -
Vvi13g0098 437 SMART serkin_6 123 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0098 437 Pfam Protein kinase domain 123 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0098 437 SUPERFAMILY Protein kinase-like (PK-like) 106 401 IPR011009 -
Vvi13g0098 437 FunFam Lectin-domain containing receptor kinase VI.3 108 199 - -
Vvi13g0098 437 Gene3D Transferase(Phosphotransferase) domain 1 200 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0098 Vvi-Chr13 886275 887588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0098 2 400 Receptor kinase-like Gene Family AT1G70110 52.696 5.05e-153 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi13g0098 Pkinase 4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0098 - - vvi:100260386 880.167