Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0097 ATGGGGGAGAGCAGGAAGCCTGGGCTGGGAATATTGATGGTGGTGATTATGTGTTCGTTGTATCAGAATTTGGGGCTTTGTTGGTCTCTCAACGACGAAGGTTTGGCTTTGTTGAGATTTCGGGAGAGGGTGGTCAGTGATCCATTCAGGGCTTTAGCGAATTGGGATGATGGAGAGCTTGATCCCTGTTCGTGGTTTGGAGTGGAGTGCTCTGATGGGAAAGTAGTGATATTGAACTTGAAAGATCTTTGTCTTAGAGGAACACTGGCACCAGAGCTCGGGAGCCTGGCTAACATAAAGTCTATTATTTTACGCAACAACTCTTTTTCTGGAACCATTCCTGAAGAGATTGGAGAGCTGAAAGAGCTGGAGGTATTGGACTTGGGATACAATAACCTCTGTGTGCCAATCCCGGCTAACCTTGGCAATAATCTGTCTCTAACAATCCTTCTACTGGACAACAATGTCCTCATAAGTAGCTTACCTTCTCAAATTCATGAGCTTGTGGTGTTATCAGAATCTCAAGTAGACGAGAACCGGCTATCTAATATTGCAAAAATTTCATCCTTGCATGGAGGATCCTGTACACGGAAAACCGACCAGACTGAAGATGTAGTTCATCACAGACTACTGTCAACAGCTGAGGATCGCAGAGTTCGCATACCTCCCTCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCATCTTCACCTTTGCCGTCACCGTCACCGTCACCAGAATTCCAGACTCGTTCTACCACAACACCTGTGCCAACACCAAGCCCGAATTCCTCTGATCCATCTGTTTCTTCTTCAGGGCCCTCCCTTACTAACACATCATCCTCTTCCCCCTCAGAAAGCTCTTCCGGGAAATCAAATTTGAAACACACTCTGCTATTGGTTGGTGTAATAGGCGGTTCTGTACTTGTTTTCATTTGCATTATTTGCATATATCTCTTTAGAACCAATAAAGTGGCCACTGTTAAACCTTGGGCCACAGGATTAAGTGGGCAGCTTCAGAAGGTCTTTGTAACCGGTGTACCAAAGCTGAAGAGGTCGGAGCTTGAAACAGCTTGTGAAGACTTCAGTAATGTAATTGGTTCTTCGTCAATAGGGACCGTGTACAAAGGAACATTGTCTAGCGGAGTTGAAATAGCTGTGACATCTGCTGCAGTGACATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGATATTGTGAAGAAGAGGAACCTTTCACCAGAATGATGGTTTTTGAATATGCTCCGAATGGAACGCTTTTTGAGCATTTACATATAAAAGAAGCTGAACACTTGGACTGGGCAATGCGGCTGAGAGCTGCAATGGGCATGGCATACTACCTCAACCATATCCACCAATTGACCCCGCCTATAGCCCATGAGAATCTGAACTCTTCAGCGGTTAATCTTGCTGAAGACTATGCAGCCAAGGTCTCAGATTTCAGCGTCTGGAATGTGATGGCTGCCACTGAGATGAAGTCACCCAGAGTGGAGCTTTCTGCTTCACCATCAGCAGACCCAGAAAGTAATGTCTACAGCTTTGGTGTAATTTTGTTTGAAATGATAACAGGTAGAGTTCCTTACTCAGTGGATAACGGCTCGCTTGAGGACTGGGCATCAAACTATTTGCAAGGGGACCGACCCATCAAAGAAATGGTGGATCCAACCCTAAAATTCTTCCAAGAGGAGCAGCTTGAGAGTATCCGTGAAGTAATCAAATCTTGTGTAAACCCTGACCCAAAACAAAGACCAACAATGAGAGACGTCACTGCAAGAATGAGAGAAATAACCGAAATAGGTCCTGATGGAGCAATCCCCAAGCTTTCTCCTCTGTGGTGGGCAGAGCTTGAGATATTGTCCACAGAAGCAAGCTAA 1965 0.4509 MGESRKPGLGILMVVIMCSLYQNLGLCWSLNDEGLALLRFRERVVSDPFRALANWDDGELDPCSWFGVECSDGKVVILNLKDLCLRGTLAPELGSLANIKSIILRNNSFSGTIPEEIGELKELEVLDLGYNNLCVPIPANLGNNLSLTILLLDNNVLISSLPSQIHELVVLSESQVDENRLSNIAKISSLHGGSCTRKTDQTEDVVHHRLLSTAEDRRVRIPPSSPSPSPSPSPSPSSSPLPSPSPSPEFQTRSTTTPVPTPSPNSSDPSVSSSGPSLTNTSSSSPSESSSGKSNLKHTLLLVGVIGGSVLVFICIICIYLFRTNKVATVKPWATGLSGQLQKVFVTGVPKLKRSELETACEDFSNVIGSSSIGTVYKGTLSSGVEIAVTSAAVTSSKDWSKNLEVQFRKKIERLSKVNHKNFVNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWAMRLRAAMGMAYYLNHIHQLTPPIAHENLNSSAVNLAEDYAAKVSDFSVWNVMAATEMKSPRVELSASPSADPESNVYSFGVILFEMITGRVPYSVDNGSLEDWASNYLQGDRPIKEMVDPTLKFFQEEQLESIREVIKSCVNPDPKQRPTMRDVTARMREITEIGPDGAIPKLSPLWWAELEILSTEAS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0097 654 FunFam Inactive receptor-like serine/threonine-protein kinase 336 444 - -
Vvi13g0097 654 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
Vvi13g0097 654 SUPERFAMILY Protein kinase-like (PK-like) 344 621 IPR011009 -
Vvi13g0097 654 Pfam Protein tyrosine and serine/threonine kinase 364 621 IPR001245 GO:0004672|GO:0006468
Vvi13g0097 654 MobiDBLite consensus disorder prediction 223 247 - -
Vvi13g0097 654 Gene3D Phosphorylase Kinase; domain 1 334 444 - -
Vvi13g0097 654 FunFam Nuclear pore complex protein NUP107 30 186 - -
Vvi13g0097 654 SUPERFAMILY L domain-like 29 185 - -
Vvi13g0097 654 ProSiteProfiles Protein kinase domain profile. 362 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0097 654 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Vvi13g0097 654 Gene3D Transferase(Phosphotransferase) domain 1 445 630 - -
Vvi13g0097 654 MobiDBLite consensus disorder prediction 248 294 - -
Vvi13g0097 654 PANTHER PROTEIN MALE DISCOVERER 2 12 652 - -
Vvi13g0097 654 MobiDBLite consensus disorder prediction 210 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0097 Vvi-Chr13 871181 875569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0097 13 619 Receptor kinase-like Gene Family AT1G66830 26.847 1.90e-49 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vvi13g0097 PK_Tyr_Ser-Thr 6.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0097 - - vvi:100265601 1154.81