Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0093 ATGTACTACTACTATTTACTATTTATAGTAGCTGTCCTTGTATATCATATTTCTAATCAACCTTTACATGATCTTTTGGGTAGGAAGGGAAAAATAGGACAAAAAAAATGTTATTTACGTGTCAACTTGGTGACGATTCGGTCATTTTCTAAGAGAGAGAAGTCTTTCTCCACATGTCAAGGGCTAGGGTTTCAGTTCCCAAATGCTGTTGAACCTTGTCCTGCAACTGCTCTCGTCGTCTTCTTCTTCTTCTTTGGCCTGAGAATTGTTCGTGAAAAGATGAAAGAAATGAAGGGAGCTGGCGACAGTAGTACTGAAGGCTCCAAGACCACAAGTTTTTCTAACCAGGAGGGAGAAGAGGGAGAGGAAGAGGAGGTGGACGAGTATAAAAAGACGAAGAATGGCGGGAGCTCGAGCAATAGCACAGTCGAGGAGAGTGAACGGAAGGCGGGTTCTGGATCTGTGAGGCGATATGTTCGGTCCAAGATGCCTAGGCTGCGGTGGACGCCTGATCTCCATCTTTGCTTTCTCCATGCTGTTGAAAGACTGGGAGGACAAGACAGAGCTACACCCAAGTTGGTTCTTCAATTGATGGACATCAAAGGCCTTAGCATATCCCATGTCAAGAGCCATCTGCAGATGTACAGGAGCAAAAAGATTGACGACCCCAATCAAGTTATGATGGAGCAAGGGCTTTTCATTGAAGGTGGAGACCATCATATTTACAAGCTTAGCCATCTCCCCATGCTCCAAAGCTTTAACCGAAGGCCTGATACTTCCGGTTTTAGATATGACAGTGCTTCGGCTTCTTGGAGAGCTAGTATGGCAAACCAGACTTATAGCCCTTACAGGGGTGGAGATGCATCTGATAGATCCAAAAATGGCGGCTACAGTTCGGTTTCTGAGAGGATTTTCAGAAGCAACAAAGGCAGTTCAGTACTCAACTATGAGTTCCATGTGGGTAATTCTTCATTCAATGGACAAGCTACTTGGAATAATGCCCATCACACCAGAGAAGAATTCCAATTGTACTCTCAAAGTCATGGATCCTGGAGAAGCCAAATCAGACCAAGCTCAATCCAATCCAATTATCTCCAACCCCAAGTGCTTGAAAGCAGAAAACAACAAGTGAATCGTTTGAACAACCCTCCCCCACCTCAAGAAAATCAAAAGACCATGCTGAAAAGAAAAAGTTCAGACTCAAACTTCGACCTAGATTTGAATCTCTCTCTGAAACCAGCACCAAAAAGCCATGACCATCATTTGGAGAAAATGGACAGTACTGAAATCGATAGCAGTTTATCTCTTTCTTTATTTTCACCTCCACCCTCAAAGCTTAGCAGGGTGAAGGAAGGAGATGGTAGTAGGAAGCATGCAGAAGGGGCAAGTACTCTAGATCTGACTCTATGA 1410 0.4397 MYYYYLLFIVAVLVYHISNQPLHDLLGRKGKIGQKKCYLRVNLVTIRSFSKREKSFSTCQGLGFQFPNAVEPCPATALVVFFFFFGLRIVREKMKEMKGAGDSSTEGSKTTSFSNQEGEEGEEEEVDEYKKTKNGGSSSNSTVEESERKAGSGSVRRYVRSKMPRLRWTPDLHLCFLHAVERLGGQDRATPKLVLQLMDIKGLSISHVKSHLQMYRSKKIDDPNQVMMEQGLFIEGGDHHIYKLSHLPMLQSFNRRPDTSGFRYDSASASWRASMANQTYSPYRGGDASDRSKNGGYSSVSERIFRSNKGSSVLNYEFHVGNSSFNGQATWNNAHHTREEFQLYSQSHGSWRSQIRPSSIQSNYLQPQVLESRKQQVNRLNNPPPPQENQKTMLKRKSSDSNFDLDLNLSLKPAPKSHDHHLEKMDSTEIDSSLSLSLFSPPPSKLSRVKEGDGSRKHAEGASTLDLTL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0093 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 220 IPR017930 -
Vvi13g0093 469 MobiDBLite consensus disorder prediction 411 469 - -
Vvi13g0093 469 MobiDBLite consensus disorder prediction 413 428 - -
Vvi13g0093 469 NCBIfam myb-like DNA-binding domain, SHAQKYF class 164 219 IPR006447 GO:0003677
Vvi13g0093 469 Pfam Myb-like DNA-binding domain 166 216 IPR001005 -
Vvi13g0093 469 MobiDBLite consensus disorder prediction 98 156 - -
Vvi13g0093 469 FunFam Myb family transcription factor 162 220 - -
Vvi13g0093 469 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 139 332 IPR046955 GO:0003700
Vvi13g0093 469 Gene3D - 163 220 - -
Vvi13g0093 469 MobiDBLite consensus disorder prediction 378 392 - -
Vvi13g0093 469 MobiDBLite consensus disorder prediction 133 148 - -
Vvi13g0093 469 MobiDBLite consensus disorder prediction 378 399 - -
Vvi13g0093 469 SUPERFAMILY Homeodomain-like 162 218 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0093 Vvi-Chr13 838515 844898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0093 152 221 G2-like Transcription Factor Family AT2G42660 74.286 1.42e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi13g0093 Myb_DNA-binding 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0093 - - vvi:100263821 723.776