Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0091 ATGGATGTTGCTCTTCCTACTCTCATGGTCTCTTCGGGCTTTCTTCCAACAGGGTCATTGCTAGAATCATTGATACACATATCTAATGAAGTTGCATCAATGGAAAGGCTTCCTGTTATACAGGTTAGAAATATCTCAACCATGATAAGAAGGATCAAACTTCTTTCCTCTCTCTTTGAAGAGATCCATGAAATGAATACCCCACTTCCCCCATCATCAATCTTGTGTCTCACTGAGCTCTTTTCTGTGATTCGGAGAGTTAAGAGTTTCATACAAGGGTGCAAGGATGCTAGCTCTCTGTGGAGCCTTGTGCAGACAGAACTTATCTCGAGTCAATTCCATGTGGTAGTGAAGGAGATGGGGAGGGCACTTGACATTTTACCTCTGAGCTTGCTCAATATAACTGCAGACATTAGGGAGCAAGTGGAGCTTCTTCACAAGCAAGCGAAAAGAGTGGATTTGTTTGTTGACCCTCGGGAGCTGCAAAGAAGAGAAGAGCTTCTCCAAGTAATGGCCACCAACAATGAGAAGAATGCCAAGAACAAGGCCTTGGTTGATTTCAGAGAAGTGAAAGAGATCTTGAGCAGCATTGGCTTGAGAAGTCCATTAGATTATGATGAAGAGATTTCAAAGCTAGAAGCAGAAGCACAGAAGCAGGCAGGCACAGGGGGACTGATTGTGGTTTCCAATATCAACAACCTCATCTCTCTGGTCTTGTACTCCAAGTCCATGATTTTTAGTGAAGAACATAATGAGAAAACTGATGAAGCATTCAAGAAGCGCTCTGCATCTTTCAGGATGAACAATGATCATTCCTCATCCTCCCAATCAGCAATTCTCAACATTCCTGATGAATTCCGCTGCCCCATTTCACTTGACTTGATGAGAGATCCTGTGATTGTTGCTTCAGGGCACACTTATGATCGAAATTCAATTGCCCAGTGGATCAATACAGGACATAATACCTGCCCCAAGAGTGGGATGAAGCTAATTCATATGGCCCTCATTCCAAACTATGCACTGAAGAGTCTAGTTCATCAATGGTGCCGTGAAAACAACATCCAATTAATTGAATCTACATCATCATCTTCCTCAGACTTGGGCAGAAGCAATAGCATGAGGAAGTCATGTGAGAAAGCTGTTGATCACATATCTGCCACAAAAACTGCTATGGATGCTGTCAAAATGACTGCAGAATTTTTAGTGGGTAAATTAGCAACAGGGTCACCTGAAATTCAGAGACAGGCAGCATATGAGCTCCGCTTATTAGCCAAAACCGGAATGGATAATCGTAGGATAATTGCTGAGGCAGGAGCTATTCCATTTCTGGTGACATTACTAAGTTCCCATGACCCAAGAATTCAGGAGAATGCTGTGACTGCCTTACTCAACCTTTCCATCTTCGATAACAATAAGATTTTAATAATGGCAGCTGGAGCAATTGACAACATAGTAGATGTTTTGCAATCAGGGAAAACCATGGAGGCAAGAGAAAATGCAGCTGCAGCAATCTTCAGCTTGTCAATGATAGATGACTGCAAGGTGACCATTGGCGCCCATCCTAGAGCCATGCCTGCATTGGTGGCACTCCTAAGAGAAGGTACTTCAGCTGGGAAAAGGGATGCTGCAACAGCACTTTTTAATCTTGTGGTTTATAGTGCCAACAAAGGAAGCGCTGTGGTTGCTGGGGCAGTTCCTTTGCTTATTGAGCTGTTGATGGATGACAAAGCGGGAATTACAGATGACGCCTTGGCAGTGCTTGCTCTGCTTTTGGGGTGTCCCGATGGGCTGGAGGAAATAAGGAAGAGTAGGATCCTAGTTCCACTTCTTATTGATCTCTTGAGATTTGGATCGCCCAAAGGGAAGGAGAATTCTATAACTCTTCTTCTGGGTCTGTGCAAAGATGGAGGAGAAGAAGTTGCAAGAAGACTCTTGCTAAATCCACGAAGTATTCCTTCTCTTCAAAGCTTGGTTGCAGATGGGTCTTTGAAAGCTCGAAGAAAGGCCGATGCCCTGCTTAGATTACTCAATAGATGCTGCTCTCAGTCTCACAGCACTGTTGGATAA 2067 0.4378 MDVALPTLMVSSGFLPTGSLLESLIHISNEVASMERLPVIQVRNISTMIRRIKLLSSLFEEIHEMNTPLPPSSILCLTELFSVIRRVKSFIQGCKDASSLWSLVQTELISSQFHVVVKEMGRALDILPLSLLNITADIREQVELLHKQAKRVDLFVDPRELQRREELLQVMATNNEKNAKNKALVDFREVKEILSSIGLRSPLDYDEEISKLEAEAQKQAGTGGLIVVSNINNLISLVLYSKSMIFSEEHNEKTDEAFKKRSASFRMNNDHSSSSQSAILNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINTGHNTCPKSGMKLIHMALIPNYALKSLVHQWCRENNIQLIESTSSSSSDLGRSNSMRKSCEKAVDHISATKTAMDAVKMTAEFLVGKLATGSPEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDNIVDVLQSGKTMEARENAAAAIFSLSMIDDCKVTIGAHPRAMPALVALLREGTSAGKRDAATALFNLVVYSANKGSAVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCPDGLEEIRKSRILVPLLIDLLRFGSPKGKENSITLLLGLCKDGGEEVARRLLLNPRSIPSLQSLVADGSLKARRKADALLRLLNRCCSQSHSTVG* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0091 688 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Vvi13g0091 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 353 IPR013083 -
Vvi13g0091 688 CDD RING-Ubox_PUB 283 332 IPR045210 -
Vvi13g0091 688 FunFam RING-type E3 ubiquitin transferase 354 515 - -
Vvi13g0091 688 Pfam U-box domain 282 353 IPR003613 GO:0004842|GO:0016567
Vvi13g0091 688 Gene3D - 493 687 IPR011989 -
Vvi13g0091 688 SUPERFAMILY ARM repeat 398 676 IPR016024 -
Vvi13g0091 688 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Vvi13g0091 688 SMART arm_5 427 467 IPR000225 GO:0005515
Vvi13g0091 688 SMART arm_5 510 551 IPR000225 GO:0005515
Vvi13g0091 688 SMART arm_5 468 509 IPR000225 GO:0005515
Vvi13g0091 688 SMART arm_5 552 592 IPR000225 GO:0005515
Vvi13g0091 688 SMART arm_5 593 634 IPR000225 GO:0005515
Vvi13g0091 688 Pfam Armadillo/beta-catenin-like repeat 429 466 IPR000225 GO:0005515
Vvi13g0091 688 SUPERFAMILY RING/U-box 271 357 - -
Vvi13g0091 688 PANTHER U BOX DOMAIN-CONTAINING 44 681 - -
Vvi13g0091 688 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Vvi13g0091 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Vvi13g0091 688 Gene3D - 354 492 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0091 Vvi-Chr13 821719 823785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0091 18 686 U-box Gene Family AT3G46510 38.988 8.36e-138 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0091 - - vvi:100246680 1289.63