Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0090 ATGAAGGGTCATGAGCCCCGTTCAAGTTCCTCCTGTGCAGCTTGCAAGTTCTTGAAAAGGAGATGCACTCCCAATTGTATATTCGCACCTTACTTCCGGTCCGATGAGCCCAAGAAATTCGCCAAAGTTCACAAGGTGTTTGGTGCCAGCAATGTGAGCAAGATCCTGGTTGAAGTCCCTGAGGAGCAACGTGAGGACACTGTCAATTCTCTTGCCTATGAGGCTGAGGCCAGGCTTAGAGACCCTGTATATGGTTGCATTGGCGCCATAGCTTTGCTCCAAAGAAAGATGGTTGAGCTCCAACATGATCTCGCCATTGCCAGAGCCCGTCTCGCCCGCTATACCATGCCCGCTTCCTCCACCTCTTCCATCTTCCATGGCAGCCTGGCCATGGCCGGTTTCCAAGACTTTCCGGGCTGCAGCGGCATATTTGACGGTTTCAGCCACCTGAATTCCATGGAGTTGAATCAGCCTGTGGCCATCAATGATTTCAGCCAACCCCCATTTCAGTTGTGA 516 0.5194 MKGHEPRSSSSCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIARARLARYTMPASSTSSIFHGSLAMAGFQDFPGCSGIFDGFSHLNSMELNQPVAINDFSQPPFQL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0090 171 Coils Coil 90 110 - -
Vvi13g0090 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 121 - -
Vvi13g0090 171 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vvi13g0090 171 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0090 Vvi-Chr13 817194 817709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0090 1 169 AS2 family AT3G11090 62.573 7.20e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0090 LOB 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0090 - - vvi:100243201 348.591