Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0089 ATGTCAATCCTTCGCAAACTCGCTCGTAAAAACCCTAATTCTCCATTTCTTCTCTGCAACACCTCACGTTTCTTCAACACCCAAAACCCTAACCCTTACGAACCCACCGTCGCTTACTACGACAACCTCATCAACACGGCGGGGCGGAACAGAGACTTCGCCTCCGTCTGCAACCTTCTCAATAAACGCGTGAGAGACGGGTGCTTCAACACCAATCACACCTTTGACTTCATCACCAACACTGACGCCGGCCTCTCCGTACTCGACGAGCTCTCCCAAGCCCTAGCTCATCTCGACAAAGGGTTCCTTCGGAAGAGCGCGTATGATTCCCTCATCGCGCGGCTCTGCAGATTAAAGCGTGTCGATGAGTCCCTGCGCTTGGTGGATACCATGGTCCAGTCGGACCACGGCGTCAACGCGTGTACGTTTCACCCTATCCTCAATGTGCTCACCAGGAAGAGGAAGATGGAGGAGGCGTGGCGCGTGATGACGATTATGAGAGAGAGCGGGGTTTCCCCTGACGTGACAGCTTACAACTATCTTCTCACGGCGTACTGCTTCACCGGGAACCTGGAGGCGGCCGTCGGAGTGCTGACGGAGATGGAGGAGGAGGGAATGGCAGCGGATGCCAGGACGTACGACGCGCTGGTGCTCGGCGCGTGTAAAGCGGGGAAGGTGGAGGGGGCTATGGTGGTGCTGAGGAGAATGGAGGACGATGGAGTGCCTATACTGTACTCCACGCACGCGCACGTTATCAATGGACTATTAAAGCTGGGCTATTATGCGCAGGCGGTGGAGTTCGTGATGATATGTGGAGGGAAAGACAAGAAGCTTGATGAAGAGAGCTTTGGGATCTTAGGAAGCCGTTTGATAAATTTGAAAAGGACTATGGAGAACCAGAGGGCGCCCAGCGCACCCCGGTCCCTCCGGCCCCGCCACGGCGGCGGCAGCGGGGGAGGTGGCCGGGAAGATTGCTGGAGCGATGTCGCCACCGAAACCCTGATCGAAGCATGGGGGGACCGTTATGTGAAGTTCAACCGAGGGAACCTTCGGCAAAAAGACTGGAAGGAAATCGCCGGCGCAGTCAACAGCCGTCACGGCGGCGCGATTCGCCGGAAAACTGACGTCCAGTGCAAGAACCGTATCGACACCTTAAAGAAGAAGTACAAGCTCGAGAAAGCGAAGCCCACGCCGTCAAAGTGGCCGTTTTATTACCGTCTTAACTCTCTCATCGGCACTAACGCCCTCACTCTCACATCGAAATTGAACTCAGGTGGATCCATCGAGGGCTCATTTAGTGGTGATGAAGATGATGAATTAGGGTTTGATGGTAGTTTGAGGAAGCTTCCCATGGATTCCGCTGATTTTTCCGGTGAGGCGGCCTGCCGGGAGTTGGCGAGATCCATTCTCAAGTTTGGAGAAATATACGAGAGAATTGAGAGCTCCAAGCAGCAGCAGATAATGGAGTTGGAAAAGCAAAGGATGGAGTTAACAAAGGATGTTGAGCTCCAAAGGATGAACATGTATATGGAAGCTCAACTTGAGCTCCAGAGAATGAAGCGCACTGCAGGGAAGAAGCCATAG 1584 0.5404 MSILRKLARKNPNSPFLLCNTSRFFNTQNPNPYEPTVAYYDNLINTAGRNRDFASVCNLLNKRVRDGCFNTNHTFDFITNTDAGLSVLDELSQALAHLDKGFLRKSAYDSLIARLCRLKRVDESLRLVDTMVQSDHGVNACTFHPILNVLTRKRKMEEAWRVMTIMRESGVSPDVTAYNYLLTAYCFTGNLEAAVGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVLRRMEDDGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINLKRTMENQRAPSAPRSLRPRHGGGSGGGGREDCWSDVATETLIEAWGDRYVKFNRGNLRQKDWKEIAGAVNSRHGGAIRRKTDVQCKNRIDTLKKKYKLEKAKPTPSKWPFYYRLNSLIGTNALTLTSKLNSGGSIEGSFSGDEDDELGFDGSLRKLPMDSADFSGEAACRELARSILKFGEIYERIESSKQQQIMELEKQRMELTKDVELQRMNMYMEAQLELQRMKRTAGKKP* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0089 527 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 306 523 IPR044823 -
Vvi13g0089 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vvi13g0089 527 Gene3D - 326 391 - -
Vvi13g0089 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vvi13g0089 527 MobiDBLite consensus disorder prediction 297 324 - -
Vvi13g0089 527 Gene3D Tetratricopeptide repeat domain 154 308 IPR011990 GO:0005515
Vvi13g0089 527 NCBIfam pentatricopeptide repeat 212 241 IPR002885 -
Vvi13g0089 527 NCBIfam pentatricopeptide repeat 142 175 IPR002885 -
Vvi13g0089 527 NCBIfam pentatricopeptide repeat 107 139 IPR002885 -
Vvi13g0089 527 NCBIfam pentatricopeptide repeat 177 209 IPR002885 -
Vvi13g0089 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Vvi13g0089 527 Pfam PPR repeat 107 134 IPR002885 -
Vvi13g0089 527 Pfam PPR repeat 205 237 IPR002885 -
Vvi13g0089 527 FunFam trihelix transcription factor ASIL2 326 391 - -
Vvi13g0089 527 Coils Coil 480 507 - -
Vvi13g0089 527 Pfam Myb/SANT-like DNA-binding domain 323 410 IPR044822 -
Vvi13g0089 527 Pfam PPR repeat family 139 186 IPR002885 -
Vvi13g0089 527 Gene3D Tetratricopeptide repeat domain 21 153 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0089 Vvi-Chr13 810932 815833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0089 463 526 Trihelix Transcription Factor Family AT3G14180 46.875 1.87e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi13g0089 Myb_DNA-bind_4 6.4e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0089 - - cic:CICLE_v10033792mg 614.764